RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TRPS1Q9UHF7 1281 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SNX6Q9UNH7 406 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 C16orf96A6NNT2 1141 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 EFCAB9A8MZ26 197 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 M0QX08 132 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 MYO1DO94832 1006 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ANXA5P08758 320 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CCDC159P0C7I6 412 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SPAM1P38567 509 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 NAE1Q13564 534 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 TUBA3CQ13748 450 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 FAM214AQ32MH5 1076 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 EFL1Q7Z2Z2 1120 aaKnown RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 TSPYL5Q86VY4 417 aaPredicted RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 CYP4Z2PQ8N1L4 340 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ZNF461Q8TAF7 563 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CNDP2Q96KP4 475 aaKnown RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 CFAP97Q9P2B7 532 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ZNF232Q9UNY5 417 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SNX8Q9Y5X2 465 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 LRRK1Q38SD2 2015 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PRAMEF33A0A0G2JMD5 474 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 C1orf226A1L170 272 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 MANSC4A6NHS7 340 aaPredicted RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 AGAP14A8MT82 685 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PRAMEF10O60809 474 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CKMP06732 381 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 RGS4P49798 205 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ABHD18Q0P651 414 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 IRF5Q13568 498 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 DUSP7Q16829 419 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PLEKHG6Q3KR16 790 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 KIAA1841Q6NSI8 718 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 LYSMD2Q8IV50 215 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 GGHQ92820 318 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CHCHD6Q9BRQ6 235 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PRM3Q9NNZ6 103 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ERVK13-1Q9NX77 482 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CLEC2DQ9UHP7 191 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PCDHB1Q9Y5F3 818 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 KIAA1671Q9BY89 1806 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PNMA8CA0A1B0GUJ8 204 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 TSPAN6O43657 245 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SOX14O95416 240 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 OXSR1O95747 527 aaPredicted RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 EFEMP2O95967 443 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 FABP3P05413 133 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 PTNP21246 168 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CA8P35219 290 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 EIF2DP41214 584 aaKnown RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 PIK3CBP42338 1070 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 INO80DQ53TQ3 878 aaPredicted RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 XKR6Q5GH73 641 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 TMEM132CQ8N3T6 1108 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SVOPLQ8N434 492 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SPPL2AQ8TCT8 520 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 NEIL2Q969S2 332 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.3□□□□□ -0.76
USP28-201ENST00000003302 OR51B5Q9H339 312 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 BRD9Q9H8M2 597 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SH3BP4Q9P0V3 963 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 LYVE1Q9Y5Y7 322 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CFAP20Q9Y6A4 193 aaKnown RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 SPTBP11277 2137 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 SLC28A1O00337 649 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 WNT9AO14904 365 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ERN1O75460 977 aaKnown RBP10.3□□□□□ -0.76
USP28-201ENST00000003302 GPX2P18283 190 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 HOXD12P35452 270 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 BMPR1AP36894 532 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CDH12P55289 794 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 TMEM53Q6P2H8 277 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 Q6ZNB5 142 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 ARMCX6Q7L4S7 300 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 WDR48Q8TAF3 677 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 WDR20Q8TBZ3 569 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CD99L2Q8TCZ2 262 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 TCEAL4Q96EI5 215 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 NEDD4LQ96PU5 975 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 OSGIN1Q9UJX0 560 aa10.3□□□□□ -0.76
USP28-201ENST00000003302 CACNA1IQ9P0X4 2223 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 RTCAO00442 366 aaKnown RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 KPNA5O15131 536 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 TGFB1P01137 390 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CTSAP10619 480 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 CKMT1AP12532 417 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 JUNDP17535 347 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 ALDH7A1P49419 539 aaKnown RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 IFITM2Q01629 132 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 GRIN2CQ14957 1233 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 TAF12Q16514 161 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 PLEKHG7Q6ZR37 379 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 ADCK1Q86TW2 530 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 STK40Q8N2I9 435 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 UTP15Q8TED0 518 aaKnown RBP10.29□□□□□ -0.76
USP28-201ENST00000003302 ASIC4Q96FT7 647 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 COPS4Q9BT78 406 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 HTATIP2Q9BUP3 242 aa10.29□□□□□ -0.76
USP28-201ENST00000003302 KLHL25Q9H0H3 589 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms