RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MZT2BQ6NZ67 158 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CCBE1Q6UXH8 406 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 C3P1Q6ZMU1 363 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SLC24A5Q71RS6 500 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 G2E3Q7L622 706 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CAMKMTQ7Z624 323 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CEACAM19Q7Z692 300 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 C5orf24Q7Z6I8 188 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CENPVQ7Z7K6 275 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ADGRD2Q7Z7M1 963 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TMEM173Q86WV6 379 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 FAM131BQ86XD5 332 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RPAP2Q8IXW5 612 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZC3H3Q8IXZ2 948 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 DND1Q8IYX4 353 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 CDK20Q8IZL9 346 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GPC2Q8N158 579 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TMTC2Q8N394 836 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 C17orf53Q8N3J3 647 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 FAM89BQ8N5H3 189 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ANKRD13CQ8N6S4 541 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PI4KAP1Q8N8J0 262 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RASGEF1AQ8N9B8 481 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SLC37A3Q8NCC5 494 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PPFIBP2Q8ND30 876 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GPRC5AQ8NFJ5 357 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 OR10G7Q8NGN6 311 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 OR6S1Q8NH40 331 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 EXD1Q8NHP7 514 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FLVCR1-AS1Q8TAF5 88 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TYMSOSQ8TAI1 123 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CD99L2Q8TCZ2 262 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MAPK15Q8TD08 544 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZDHHC19Q8WVZ1 309 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 TEKT4Q8WW24 435 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 P2RX5Q93086 422 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TOMM40LQ969M1 308 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SLAMF9Q96A28 289 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MOB3AQ96BX8 217 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MOAP1Q96BY2 351 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NXNL1Q96CM4 212 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SPACA9Q96E40 222 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 OTUB1Q96FW1 271 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 CALML4Q96GE6 196 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ATXN7L3BQ96GX2 97 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LURAP1Q96LR2 239 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 AGAP4Q96P64 663 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RANBP9Q96S59 729 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LGMNQ99538 433 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FEVQ99581 238 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NDNQ99608 321 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LPAR4Q99677 370 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NKX3-1Q99801 234 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 MGME1Q9BQP7 344 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 DGCR6LQ9BY27 220 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PITPNM3Q9BZ71 974 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 OCR1Q9BZK8 76 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 HOXD1Q9GZZ0 328 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZMYND12Q9H0C1 365 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ADNPQ9H2P0 1102 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 OSGEPL1Q9H4B0 414 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TUBB1Q9H4B7 451 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SMARCAD1Q9H4L7 1026 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NOL11Q9H8H0 719 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 CNOT10Q9H9A5 744 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 CDH20Q9HBT6 801 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 WFDC1Q9HC57 220 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SPHK2Q9NRA0 654 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PHPT1Q9NRX4 125 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZNF446Q9NWS9 450 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TEX10Q9NXF1 929 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 HAO2Q9NYQ3 351 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 C5AR2Q9P296 337 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FRMD4AQ9P2Q2 1039 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 UBQLN2Q9UHD9 624 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 IL17BQ9UHF5 180 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PILRBQ9UKJ0 227 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PRDM4Q9UKN5 801 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ELF5Q9UKW6 265 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 VSIG4Q9Y279 399 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LAS1LQ9Y4W2 734 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 KLK4Q9Y5K2 254 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 STYXL1Q9Y6J8 313 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RPS6KL1Q9Y6S9 549 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FAM169AQ9Y6X4 670 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 R4GN57 208 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FAM205AQ6ZU69 1335 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RSF1Q96T23 1441 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 A0A087WV48 116 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 A0A087WWV3 80 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TRBV5-4A0A0C4DH59 114 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TRBV4-1A0A0J9YWV2 114 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 EDDM13A0A1B0GTR0 161 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ANKRD18BA2A2Z9 1011 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 A8MU76 341 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 A8MV72 311 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 ARHGEF33A8MVX0 844 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 A8MXE2 369 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 F8VVB4 439 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms