RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TNFSF14O43557 240 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 OR1F1O43749 312 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 NRP2O60462 931 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 TBX6O95947 436 aaPredicted RBP17.66■□□□□ 0.42
CLN3-254ENST00000637050 IL12AP29459 219 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 GRK3P35626 688 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 KCNJ2P63252 427 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 MXRA7P84157 204 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 ACSM2AQ08AH3 577 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 CUL3Q13618 768 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 SIM2Q14190 667 aaPredicted RBP17.66■□□□□ 0.42
CLN3-254ENST00000637050 RCAN2Q14206 197 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 PTGR1Q14914 329 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 ANGPT1Q15389 498 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 C14orf28Q4W4Y0 310 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 SPIN4Q56A73 249 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 ACSM2BQ68CK6 577 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 PAQR7Q86WK9 346 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 FAM9CQ8IZT9 166 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 TTLQ8NG68 377 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 RCN3Q96D15 328 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 OR51B5Q9H339 312 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 EFCAB1Q9HAE3 211 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 HRASLS2Q9NWW9 162 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 BDP1A6H8Y1 2624 aa17.66■□□□□ 0.42
CLN3-254ENST00000637050 FAM234BA2RU67 622 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 LILRA5A6NI73 299 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 FBP2O00757 339 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 HAT1O14929 419 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 SH3BGRLO75368 114 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 GIMD1P0DJR0 217 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 NQO1P15559 274 aaKnown RBP17.65■□□□□ 0.42
CLN3-254ENST00000637050 SDC1P18827 310 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 GSTM2P28161 218 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 DPP6P42658 865 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 POLR2JP52435 117 aaKnown RBP17.65■□□□□ 0.42
CLN3-254ENST00000637050 SLC5A12Q1EHB4 618 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 DUOXA1Q1HG43 343 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 DNAL1Q4LDG9 190 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 C6orf132Q5T0Z8 1188 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 GALNT18Q6P9A2 607 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 SPESP1Q6UW49 350 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 OOSP2Q86WS3 158 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 PLD3Q8IV08 490 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 C1orf52Q8N6N3 182 aaKnown RBP17.65■□□□□ 0.42
CLN3-254ENST00000637050 MS4A8Q9BY19 250 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 CADM1Q9BY67 442 aaKnown RBP17.65■□□□□ 0.42
CLN3-254ENST00000637050 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.65■□□□□ 0.42
CLN3-254ENST00000637050 BAIAP2L1Q9UHR4 511 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 KLHL20Q9Y2M5 609 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 KLK4Q9Y5K2 254 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 TMEM131Q92545 1883 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 ZDBF2Q9HCK1 2354 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 NCOR1O75376 2440 aa17.65■□□□□ 0.42
CLN3-254ENST00000637050 KNL1Q8NG31 2342 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 BBIP1A8MTZ0 92 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 C9JVG2 144 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 NR5A2O00482 541 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 AIM2O14862 343 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 GSC2O15499 205 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 CLEC3AO75596 197 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 CAPN3P20807 821 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 BCL6P41182 706 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 RAE1P78406 368 aaKnown RBP17.64■□□□□ 0.42
CLN3-254ENST00000637050 SLC25A3Q00325 362 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 RABEPKQ7Z6M1 372 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 TRIM73Q86UV7 250 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 METTL4Q8N3J2 472 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 TBC1D19Q8N5T2 526 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 KYQ8NBH2 561 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 CREB3L4Q8TEY5 395 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 PRM3Q9NNZ6 103 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 ANKMY1Q9P2S6 941 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 PCDHGA2Q9Y5H1 932 aa17.64■□□□□ 0.42
CLN3-254ENST00000637050 HEATR5BQ9P2D3 2071 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 A0A1B0GTQ1 180 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 OR2A25A4D2G3 310 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 MYO1DO94832 1006 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 SEMA3DO95025 777 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 ITGAXP20702 1163 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 TACR1P25103 407 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 AHRP35869 848 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 NUDT2P50583 147 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 CLDN8P56748 225 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 KCNK10P57789 538 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 CYP4F2P78329 520 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 DEPDC1Q5TB30 811 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 KHDRBS2Q5VWX1 349 aaKnown RBP17.64■□□□□ 0.41
CLN3-254ENST00000637050 REP15Q6BDI9 236 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 KANSL1Q7Z3B3 1105 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 CEP76Q8TAP6 659 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 RSC1A1Q92681 617 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 UTP4Q969X6 686 aaKnown RBP17.64■□□□□ 0.41
CLN3-254ENST00000637050 SPDL1Q96EA4 605 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 NPAS2Q99743 824 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 DPY30Q9C005 99 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 AP1M2Q9Y6Q5 423 aa17.64■□□□□ 0.41
CLN3-254ENST00000637050 DYTNA2CJ06 578 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 ZW10O43264 779 aa17.63■□□□□ 0.41
CLN3-254ENST00000637050 UBXN7O94888 489 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms