RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 DZANK1Q9NVP4 752 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 FZD1Q9UP38 647 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 SH2B3Q9UQQ2 575 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 PCDHB14Q9Y5E9 798 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 PMF1-BGLAPU3KQ54 211 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 EFCAB9A8MZ26 197 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 C2orf74A8MZ97 194 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 MAGEA3P43357 314 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 TAS2R43P59537 309 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 SIM2Q14190 667 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-209ENST00000635750 FGL2Q14314 439 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 RBM39Q14498 530 aaKnown RBP5.41□□□□□ -1.54
SCN1A-209ENST00000635750 SGCAQ16586 387 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 KIAA1161Q6NSJ0 714 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 TMED4Q7Z7H5 227 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 GPR137CQ8N3F9 429 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 OR9K2Q8NGE7 335 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 OR56A1Q8NGH5 318 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 CHPT1Q8WUD6 406 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 CYB5D2Q8WUJ1 264 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 S100PBPQ96BU1 408 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 CCNL2Q96S94 520 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-209ENST00000635750 PPP4R1LQ9P1A2 415 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 KLHL13Q9P2N7 655 aa5.41□□□□□ -1.54
SCN1A-209ENST00000635750 LOC100509620A0A075B734 347 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 hCG_1818297A0A087WSY0 165 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 hCG_2039718K7EN88 272 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 HBQ1P09105 142 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DLDP09622 509 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 TAL1P17542 331 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 S1PR1P21453 382 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DSTNP60981 165 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 SLC3A1Q07837 685 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 CAPSQ13938 189 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DACT2Q5SW24 774 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 REP15Q6BDI9 236 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 PDE12Q6L8Q7 609 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DCP2Q8IU60 420 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 OR4E2Q8NGC2 313 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 OR5L2Q8NGL0 311 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 SHKBP1Q8TBC3 707 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 HOXB13Q92826 284 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 HSPA12BQ96MM6 686 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 POLR2J2Q9GZM3 115 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 SUV39H2Q9H5I1 410 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 SMPD3Q9NY59 655 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 COMMD3Q9UBI1 195 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MKLN1Q9UL63 735 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 TIMM22Q9Y584 194 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ST14Q9Y5Y6 855 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 COMMD3-BMI1R4GMX3 469 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 A0A1W2PRU2 124 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 OR6C6A6NF89 314 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 J3QLW9 94 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 K7EPI3 171 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 CLN5O75503 358 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 AP2A1O95782 977 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ZNF19P17023 458 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 PREPP48147 710 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DLX2Q07687 328 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ST3GAL3Q11203 375 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 HACD2Q6Y1H2 254 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 KCTD9Q7L273 389 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 P2RY8Q86VZ1 359 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ROPN1LQ96C74 230 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 PGM2Q96G03 612 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MTERF1Q99551 399 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 LPIN3Q9BQK8 851 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MND1Q9BWT6 205 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DEFB126Q9BYW3 111 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 PRMT8Q9NR22 394 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ZCCHC3Q9NUD5 404 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 TMEM100Q9NV29 134 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 RLIMQ9NVW2 624 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 HIF3AQ9Y2N7 669 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ARGFXA6NJG6 315 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 PRR5-ARHGAP8B1AHC4 643 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 CXCR6O00574 342 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ARL6IP5O75915 188 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 H2BFMP0C1H6 154 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 BST1Q10588 318 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 SLBPQ14493 270 aaKnown RBP eCLIP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 TMEM198Q66K66 360 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 DCDC5Q6ZRR9 648 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 OR9A4Q8NGU2 314 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 OR10A6Q8NH74 314 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MFSD8Q8NHS3 518 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 EPS8L1Q8TE68 723 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MAP3K3Q99759 626 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ZNF649Q9BS31 505 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 MS4A12Q9NXJ0 267 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 ZDHHC3Q9NYG2 299 aa5.4□□□□□ -1.54
SCN1A-209ENST00000635750 NUFIP1Q9UHK0 495 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 R3HDM2Q9Y2K5 976 aaKnown RBP5.4□□□□□ -1.54
SCN1A-209ENST00000635750 NWD1Q149M9 1564 aa5.4□□□□□ -1.55
SCN1A-209ENST00000635750 CCDC88AQ3V6T2 1871 aa5.4□□□□□ -1.55
SCN1A-209ENST00000635750 CAPN8A6NHC0 703 aa5.4□□□□□ -1.55
SCN1A-209ENST00000635750 TGFB1P01137 390 aa5.4□□□□□ -1.55
SCN1A-209ENST00000635750 SFTPBP07988 381 aa5.4□□□□□ -1.55
SCN1A-209ENST00000635750 SLC2A2P11168 524 aaPredicted RBP5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms