RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NXPE4Q6UWF7 544 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 COX15Q7KZN9 410 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 TMPRSS11BQ86T26 416 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ASPGQ86U10 573 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ARHGEF39Q8N4T4 335 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 MFSD9Q8NBP5 474 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 CAMKVQ8NCB2 501 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 OR2Y1Q8NGV0 311 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ADAMTS17Q8TE56 1095 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ISL2Q96A47 359 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 COL26A1Q96A83 441 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ATOH8Q96SQ7 321 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 TMEM79Q9BSE2 394 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 SARGQ9BW04 601 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 VPS11Q9H270 941 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 SLC26A1Q9H2B4 701 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 WDR54Q9H977 334 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 PTBP2Q9UKA9 531 aaKnown RBP16.05■□□□□ 0.16
TRIM28-215ENST00000601150 MAN2B2Q9Y2E5 1009 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 MAU2Q9Y6X3 613 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 NUP210LQ5VU65 1888 aa16.05■□□□□ 0.16
TRIM28-215ENST00000601150 ATMQ13315 3056 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 SUPT3HB4E1H0 165 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 PRPF4O43172 522 aaKnown RBP eCLIP16.04■□□□□ 0.16
TRIM28-215ENST00000601150 OR1F1O43749 312 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 CNOT3O75175 753 aaKnown RBP16.04■□□□□ 0.16
TRIM28-215ENST00000601150 SUPT3HO75486 399 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 KLHL2O95198 593 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 STATHP02808 62 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 MYBL2P10244 700 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 GNAZP19086 355 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 FBLP22087 321 aaKnown RBP16.04■□□□□ 0.16
TRIM28-215ENST00000601150 MAGEA12P43365 314 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 KCNC1P48547 511 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 HSPA7P48741 367 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 POLE2P56282 527 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 CDC16Q13042 620 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 ACAP2Q15057 778 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 LGSNQ5TDP6 509 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 KLC3Q6P597 504 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 RAB43Q86YS6 212 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 DTWD1Q8N5C7 304 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 EXD3Q8N9H8 876 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 RHEBL1Q8TAI7 183 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.04■□□□□ 0.16
TRIM28-215ENST00000601150 TM4SF19Q96DZ7 209 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 AIF1LQ9BQI0 150 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 CAPS2Q9BXY5 557 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 DRC3Q9H069 523 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 ADNPQ9H2P0 1102 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 DNAJC11Q9NVH1 559 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 NXT1Q9UKK6 140 aaKnown RBP16.04■□□□□ 0.16
TRIM28-215ENST00000601150 KCNMB2Q9Y691 235 aa16.04■□□□□ 0.16
TRIM28-215ENST00000601150 SYCE1LA8MT33 242 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 TRIM49D1C9J1S8 452 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 UBXN8O00124 270 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 STK16O75716 305 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SNRPAP09012 282 aaKnown RBP16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SLC35G6P0C7Q6 338 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SFTPCP11686 197 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 OTX2P32243 289 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 GLRBP48167 497 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 REEP5Q00765 189 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 FAM53BQ14153 422 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SLC29A2Q14542 456 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SSPNQ14714 243 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 NKG7Q16617 165 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 ZNF740Q8NDX6 193 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SLC13A3Q8WWT9 602 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 CD244Q9BZW8 370 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 SPNS1Q9H2V7 528 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 ANKZF1Q9H8Y5 726 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 GPRC5BQ9NZH0 403 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 CTSFQ9UBX1 484 aa16.03■□□□□ 0.16
TRIM28-215ENST00000601150 A0A0A6YYC8 382 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 I3L1I5 382 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 FOXS1O43638 330 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 H2AFYO75367 372 aaKnown RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 SLU7O95391 586 aaKnown RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 C1GALT1C1LP0DN25 315 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 GCAP28676 217 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 AHRP35869 848 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 SCTRP47872 440 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 AVPR1BP47901 424 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 OCA2Q04671 838 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 KCNAB2Q13303 367 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 DSG2Q14126 1118 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 PDK4Q16654 411 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 FBXO48Q5FWF7 155 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 TMEM214Q6NUQ4 689 aaKnown RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 ADGRD1Q6QNK2 874 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 SLCO4C1Q6ZQN7 724 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 LRRC70Q7Z2Q7 622 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 APLFQ8IW19 511 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 SNX31Q8N9S9 440 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 ESAMQ96AP7 390 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 MMABQ96EY8 250 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-215ENST00000601150 GPR78Q96P69 363 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 IP6K3Q96PC2 410 aa16.02■□□□□ 0.16
TRIM28-215ENST00000601150 MACROD1Q9BQ69 325 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms