RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FOXL2P58012 376 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 NDUFA9Q16795 377 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 FAM83EQ2M2I3 478 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 FBXO48Q5FWF7 155 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 NXPE4Q6UWF7 544 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 TMPRSS11BQ86T26 416 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 ASPGQ86U10 573 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 ARHGEF39Q8N4T4 335 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 TBC1D19Q8N5T2 526 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 EIF1ADQ8N9N8 165 aaKnown RBP13.19□□□□□ -0.3
UPF1-205ENST00000598209 MFSD9Q8NBP5 474 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 CAMKVQ8NCB2 501 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 PDPRQ8NCN5 879 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 OR2Y1Q8NGV0 311 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 DCAKDQ8WVC6 231 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 COL26A1Q96A83 441 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 MVB12AQ96EY5 273 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 ATOH8Q96SQ7 321 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 MACROD1Q9BQ69 325 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 SARGQ9BW04 601 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 TXLNGYQ9BZA5 131 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 SPNS1Q9H2V7 528 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 CNOT10Q9H9A5 744 aaKnown RBP13.19□□□□□ -0.3
UPF1-205ENST00000598209 PELI2Q9HAT8 420 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 NUDT4Q9NZJ9 180 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 CTSFQ9UBX1 484 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 ZNF180Q9UJW8 692 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 CDC14AQ9UNH5 594 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 ATRXP46100 2492 aa13.19□□□□□ -0.3
UPF1-205ENST00000598209 SUPT3HB4E1H0 165 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 UBXN8O00124 270 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 FOXS1O43638 330 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 OR1F1O43749 312 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 SUPT3HO75486 399 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 IPO13O94829 963 aaKnown RBP13.18□□□□□ -0.3
UPF1-205ENST00000598209 KLHL2O95198 593 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 MYBL2P10244 700 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 FBLP22087 321 aaKnown RBP13.18□□□□□ -0.3
UPF1-205ENST00000598209 CNTFP26441 200 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 OTX2P32243 289 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 GGT5P36269 586 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 MAGEA12P43365 314 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 HSPA7P48741 367 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 REEP5Q00765 189 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 CDC16Q13042 620 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 SSPNQ14714 243 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 NKG7Q16617 165 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 RAB43Q86YS6 212 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 TMEM151BQ8IW70 566 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 ZNF740Q8NDX6 193 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 SLC13A3Q8WWT9 602 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 ISL2Q96A47 359 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 ESAMQ96AP7 390 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 TM4SF19Q96DZ7 209 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 AIF1LQ9BQI0 150 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 DRC3Q9H069 523 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 VPS11Q9H270 941 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 SLC26A1Q9H2B4 701 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 ADNPQ9H2P0 1102 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 WDR54Q9H977 334 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 DNAJC11Q9NVH1 559 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 GEMIN8Q9NWZ8 242 aaKnown RBP13.18□□□□□ -0.3
UPF1-205ENST00000598209 PTBP2Q9UKA9 531 aaKnown RBP13.18□□□□□ -0.3
UPF1-205ENST00000598209 MRPS2Q9Y399 296 aaKnown RBP13.18□□□□□ -0.3
UPF1-205ENST00000598209 COL6A6A6NMZ7 2263 aa13.18□□□□□ -0.3
UPF1-205ENST00000598209 SCN2AQ99250 2005 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 A0A0A6YYC8 382 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 ARGFXA6NJG6 315 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 ESPNB1AK53 854 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 TRIM49D1C9J1S8 452 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 I3L1I5 382 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 PRPF4O43172 522 aaKnown RBP eCLIP13.17□□□□□ -0.3
UPF1-205ENST00000598209 STK16O75716 305 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 UMODP07911 640 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 SFTPCP11686 197 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 GNAZP19086 355 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 VARSP26640 1264 aaKnown RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 TNFRSF8P28908 595 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 SCTRP47872 440 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 GLRBP48167 497 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 SNRPNP63162 240 aaKnown RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 KCNAB2Q13303 367 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 DSG2Q14126 1118 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 FAM53BQ14153 422 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 SLC29A2Q14542 456 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 ACAP2Q15057 778 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 CPZQ66K79 652 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 TMEM214Q6NUQ4 689 aaKnown RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 KLC3Q6P597 504 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 APLFQ8IW19 511 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 SNX31Q8N9S9 440 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 RHEBL1Q8TAI7 183 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 MMABQ96EY8 250 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 SPSB2Q99619 263 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 EPB41L4BQ9H329 900 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 SOX17Q9H6I2 414 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 ANKZF1Q9H8Y5 726 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 GPRC5BQ9NZH0 403 aa13.17□□□□□ -0.3
UPF1-205ENST00000598209 ZNF282Q9UDV7 671 aaPredicted RBP13.17□□□□□ -0.3
UPF1-205ENST00000598209 NXT1Q9UKK6 140 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms