RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 OR4K1Q8NGD4 311 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 STAG3L4Q8TBR4 150 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 KIAA1191Q96A73 305 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 MIEF2Q96C03 454 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 RHBDF1Q96CC6 855 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 MMABQ96EY8 250 aaPredicted RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 C10orf90Q96M02 699 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 AIF1LQ9BQI0 150 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 FUT8Q9BYC5 575 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 CDC42EP4Q9H3Q1 356 aaKnown RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 PELI2Q9HAT8 420 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 SEMA3GQ9NS98 782 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 SLC22A14Q9Y267 594 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 ACOT9Q9Y305 439 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 PCDHGB7Q9Y5F8 929 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 PCDHGA9Q9Y5G4 932 aaKnown RBP12.75□□□□□ -0.37
CLK3-216ENST00000564468 MAU2Q9Y6X3 613 aa12.75□□□□□ -0.37
CLK3-216ENST00000564468 A0A087X1B8 175 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 FEZF1A0PJY2 475 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 VSTM2BA6NLU5 285 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 H0YIG0 161 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 H2AFYO75367 372 aaKnown RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 INHBAP08476 426 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 LTA4HP09960 611 aaKnown RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 GNAZP19086 355 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 MMP11P24347 488 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 CXCR2P25025 360 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 AHRP35869 848 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 CCL11P51671 97 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SKP1P63208 163 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SRSF1Q07955 248 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLK3-216ENST00000564468 ATP1A4Q13733 1029 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 UAP1Q16222 522 aaPredicted RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 ZXDCQ2QGD7 858 aaPredicted RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 MROH9Q5TGP6 573 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 NIPAL1Q6NVV3 410 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 COX15Q7KZN9 410 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 MRGPREQ86SM8 312 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 KLHDC8AQ8IYD2 350 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 METTL27Q8N6F8 245 aaPredicted RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 CLEC1AQ8NC01 280 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 STT3BQ8TCJ2 826 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SLC13A3Q8WWT9 602 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 NEIL2Q969S2 332 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 TM4SF19Q96DZ7 209 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 OR4K3Q96R72 315 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SPSB2Q99619 263 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SLC25A23Q9BV35 468 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 YIPF2Q9BWQ6 316 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 MKKSQ9NPJ1 570 aaPredicted RBP12.74□□□□□ -0.37
CLK3-216ENST00000564468 C14orf105Q9NVL8 296 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 WWOXQ9NZC7 414 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 CD274Q9NZQ7 290 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 RNF112Q9ULX5 631 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 SH2B3Q9UQQ2 575 aa12.74□□□□□ -0.37
CLK3-216ENST00000564468 CNTRLQ7Z7A1 2325 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 IGLV3-12A0A075B6K2 115 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 A0A087WUV0 522 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 URADA6NGE7 173 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 NCF1BA6NI72 391 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 NCF1CA8MVU1 366 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 AGPSO00116 658 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 PCDH17O14917 1159 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 P2RX6O15547 441 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 OR1F1O43749 312 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 LCMT2O60294 686 aaKnown RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 CNOT3O75175 753 aaKnown RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 WDR47O94967 919 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 MED26O95402 600 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 NSA2O95478 260 aaKnown RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 ACSL3O95573 720 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 UMODP07911 640 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 ZGLP1P0C6A0 271 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 SLC35E2BP0CK96 405 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 NCF1P14598 390 aaPredicted RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 CNTFP26441 200 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 GGT5P36269 586 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 BCL6P41182 706 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 SERPINB8P50452 374 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 SERPINB9P50453 376 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 RGS1Q08116 209 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 PWP1Q13610 501 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 EFTUD2Q15029 972 aaKnown RBP eCLIP12.73□□□□□ -0.375e-12■■■■□ 21.7
CLK3-216ENST00000564468 RBBP7Q16576 425 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 FAM83EQ2M2I3 478 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 COLEC12Q5KU26 742 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 FAM69BQ5VUD6 431 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 NXPE4Q6UWF7 544 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 VN1R4Q7Z5H5 301 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 CMC1Q7Z7K0 106 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 TMPRSS11BQ86T26 416 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 HPS6Q86YV9 775 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 CNPY4Q8N129 248 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 SPATA6LQ8N4H0 392 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 TRPV3Q8NET8 790 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 MRRFQ96E11 262 aaKnown RBP12.73□□□□□ -0.37
CLK3-216ENST00000564468 CRB3Q9BUF7 120 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 TRIM4Q9C037 500 aa12.73□□□□□ -0.37
CLK3-216ENST00000564468 UNKQ9C0B0 810 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms