RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ADCK2Q7Z695 626 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 RPS19BP1Q86WX3 136 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 KRT222Q8N1A0 295 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 POGLUT1Q8NBL1 392 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 WFDC11Q8NEX6 87 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 OR9A4Q8NGU2 314 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 OR6P1Q8NGX9 317 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 OR51Q1Q8NH59 317 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 HMGCLL1Q8TB92 370 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 ACTL9Q8TC94 416 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 MAGEC3Q8TD91 643 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 NUDT8Q8WV74 236 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 C18orf12Q96KH6 178 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 SPATA13Q96N96 652 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 LPAR4Q99677 370 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 FAM118BQ9BPY3 351 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 BPIFA3Q9BQP9 254 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PLCD4Q9BRC7 762 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 CARD6Q9BX69 1037 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 SLC6A16Q9GZN6 736 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 MMP25Q9NPA2 562 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 ABCF3Q9NUQ8 709 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 HCN3Q9P1Z3 774 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PCYOX1Q9UHG3 505 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 METRNQ9UJH8 293 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 TSR3Q9UJK0 312 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 RUVBL2Q9Y230 463 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 NFS1Q9Y697 457 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 FREM3P0C091 2139 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ARHGAP21Q5T5U3 1957 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 MROH6A6NGR9 719 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 P2RX6O15547 441 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 GOT2P00505 430 aaKnown RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 STATHP02808 62 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 GYPCP04921 128 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 CYC1P08574 325 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 TFEBP19484 476 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 CCNFP41002 786 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 KIR2DL3P43628 341 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ZFP36L2P47974 494 aaKnown RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ITGA8P53708 1063 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 DLX5P56178 289 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 UBASH3AP57075 661 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SNTB1Q13884 538 aaKnown RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ABRAXAS2Q15018 415 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 NSDHLQ15738 373 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 FASTKD1Q53R41 847 aaKnown RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 FBXW10Q5XX13 1052 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 PTRHD1Q6GMV3 140 aaKnown RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 PAOXQ6QHF9 649 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 AFTPHQ6ULP2 937 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SUSD1Q6UWL2 747 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ARSKQ6UWY0 536 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 OTOAQ7RTW8 1153 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 CAMKMTQ7Z624 323 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 PAQR7Q86WK9 346 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 PRIMA1Q86XR5 153 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 CDC20BQ86Y33 519 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 KATNAL2Q8IYT4 538 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 LGI4Q8N135 537 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 OR4L1Q8NH43 312 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SMPDL3AQ92484 453 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 MRFAP1L1Q96HT8 127 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 OR2A5Q96R48 311 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 DEFB127Q9H1M4 99 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 GOLPH3Q9H4A6 298 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SYNPO2LQ9H987 977 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 LRRC40Q9H9A6 602 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 RASSF1Q9NS23 344 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SPTLC3Q9NUV7 552 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SPATA7Q9P0W8 599 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 TAC3Q9UHF0 121 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 ANAPC5Q9UJX4 755 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 KLF13Q9Y2Y9 288 aaPredicted RBP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS4A-203ENST00000564399 L3MBTL1Q9Y468 752 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 NBEAL1Q6ZS30 2694 aa6.88□□□□□ -1.31
VPS4A-203ENST00000564399 NPIPA2E9PIF3 369 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 NPIPA3F8WFD2 350 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 H0YIG0 161 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CDK2AP1O14519 115 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PRMT5O14744 637 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 KPNA5O15131 536 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PEX1O43933 1283 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CDC123O75794 336 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 CCNDBP1O95273 360 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 NSA2O95478 260 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 GAS8O95995 478 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 EZRP15311 586 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 IL1RNP18510 177 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 TPP2P29144 1249 aaPredicted RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 MARCKSL1P49006 195 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 HLCSP50747 726 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 OR4D2P58180 307 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 SLC26A5P58743 744 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 TPM4P67936 248 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PRAMEP78395 509 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 PRDX1Q06830 199 aaKnown RBP6.87□□□□□ -1.31
VPS4A-203ENST00000564399 KEAP1Q14145 624 aa6.87□□□□□ -1.31
VPS4A-203ENST00000564399 USP10Q14694 798 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms