RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CDY1Q9Y6F8 540 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 USH1CQ9Y6N9 552 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 CACNA1IQ9P0X4 2223 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 PLB1Q6P1J6 1458 aa4.93□□□□□ -1.62
VPS35-205ENST00000563984 RUSC2Q8N2Y8 1516 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PARD3Q8TEW0 1356 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 A0A0A6YYH2 397 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LOC102723971A0A1B0GUV8 181 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 GNG14A0A1W2PPG7 69 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 FAM230AA0A1W2PPH8 454 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TRBC2A0A5B9 178 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 FAM172BPA6NC97 362 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 URADA6NGE7 173 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 A6NJ64 397 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SUPT3HB4E1H0 165 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 KCNJ18B7U540 433 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 H3BNC9 293 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SMIM22K7EJ46 135 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZNF701M0R085 212 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 TNPO2O14787 897 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 LDLRAD4O15165 306 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PRPF4O43172 522 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS35-205ENST00000563984 AP5Z1O43299 807 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TLX2O43763 284 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 ATG13O75143 517 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 BCAS1O75363 584 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 RHOBTB1O94844 696 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 VNN2O95498 520 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SERPINA3P01011 423 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TNNC2P02585 160 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 YES1P07947 543 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CD3GP09693 182 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 OR8G3PP0DMU2 310 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CALCBP10092 127 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SRCP12931 536 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ENO3P13929 434 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 ERCC2P18074 760 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 NCF2P19878 526 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 HNF1AP20823 631 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 WARSP23381 471 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 KLRC1P26715 233 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ABCD3P28288 659 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TNFRSF8P28908 595 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 OXTRP30559 389 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PSMB10P40306 273 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PRCPP42785 496 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SLCO1A2P46721 670 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ALDH3B2P48448 385 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 HCAR3P49019 387 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CDK9P50750 372 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 SMSP52788 366 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 NKX2-5P52952 324 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 BCAT1P54687 386 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 RPS3AP61247 264 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 AP1S1P61966 158 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 REEP5Q00765 189 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 RIPPLY1Q0D2K3 151 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PRKAA1Q13131 559 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MAB21L1Q13394 359 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 GAMTQ14353 236 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 KCNJ12Q14500 433 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PDK2Q15119 407 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LTB4RQ15722 352 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 FAM187BQ17R55 369 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LY6KQ17RY6 165 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SLC35G1Q2M3R5 365 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 HSDL1Q3SXM5 330 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZRANB3Q5FWF4 1079 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 C6orf10Q5SRN2 563 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZDHHC20Q5W0Z9 365 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 KRT79Q5XKE5 535 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ALS2CLQ60I27 953 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PMF1Q6P1K2 205 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MSANTD2Q6P1R3 559 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 C5orf46Q6UWT4 87 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PLEKHG7Q6ZR37 379 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 KIAA0408Q6ZU52 694 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LRRC8DQ7L1W4 858 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 GSTA5Q7RTV2 222 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LRRC70Q7Z2Q7 622 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SMIM15Q7Z3B0 74 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MCOLN2Q8IZK6 566 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZNF786Q8N393 782 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 COMMD1Q8N668 190 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS35-205ENST00000563984 VGLL2Q8N8G2 317 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ENDOVQ8N8Q3 282 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 KDM1BQ8NB78 822 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SLC37A3Q8NCC5 494 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 OR56A3Q8NH54 315 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 NDNFQ8TB73 568 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZNF596Q8TC21 504 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PNPT1Q8TCS8 783 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 TAS1R2Q8TE23 839 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TMEM171Q8WVE6 324 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 GLMPQ8WWB7 406 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ROBO4Q8WZ75 1007 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 RSC1A1Q92681 617 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TMEM143Q96AN5 459 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MTERF3Q96E29 417 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms