RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 FAM53BQ14153 422 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 USP10Q14694 798 aaKnown RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 MEP1AQ16819 746 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 C11orf63Q6NUN7 778 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 PAPD4Q6PIY7 484 aaKnown RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 AFTPHQ6ULP2 937 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 Q71RC1 249 aaPredicted RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 LIX1LQ8IVB5 337 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 TAB3Q8N5C8 712 aaPredicted RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 WFDC11Q8NEX6 87 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 M1APQ8TC57 530 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 ASZ1Q8WWH4 475 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 RAD51AP1Q96B01 352 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 ZNF559Q9BR84 538 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 UTP23Q9BRU9 249 aaKnown RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 OSBPL8Q9BZF1 889 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 LRRC40Q9H9A6 602 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 NHEJ1Q9H9Q4 299 aaPredicted RBP9.73□□□□□ -0.85
SF3B3-204ENST00000563739 KCNK13Q9HB14 408 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 HCN3Q9P1Z3 774 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 PCYOX1Q9UHG3 505 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 SLC39A10Q9ULF5 831 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 RIMKLBQ9ULI2 386 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 CDC14AQ9UNH5 594 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 SH2B3Q9UQQ2 575 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 FAM215AQ9Y5M1 114 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 ANK2Q01484 3957 aa9.73□□□□□ -0.85
SF3B3-204ENST00000563739 RTTNQ86VV8 2226 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PINLYPA6NC86 204 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 MYO1CO00159 1063 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PRRG2O14669 202 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PRPF4O43172 522 aaKnown RBP eCLIP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 AKR1B10O60218 316 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 NSA2O95478 260 aaKnown RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 RPN2P04844 631 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 CYC1P08574 325 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 ERVK-10P10266 1014 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 IL1RNP18510 177 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TFEBP19484 476 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 CDC25BP30305 580 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 XCR1P46094 333 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 MEOX1P50221 254 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 SLC26A5P58743 744 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 FOLH1Q04609 750 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 SNTB1Q13884 538 aaKnown RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PRPSAP1Q14558 356 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PARP6Q2NL67 630 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 SFT2D3Q587I9 215 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 ICE2Q659A1 982 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 RTL6Q6ICC9 239 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PCGF5Q86SE9 256 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 LGI4Q8N135 537 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 ARMC10Q8N2F6 343 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TC2NQ8N9U0 490 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TMEM178AQ8NBL3 297 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PPFIBP2Q8ND30 876 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 C16orf52Q8NHV5 167 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PDLIM2Q96JY6 352 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 BIRC8Q96P09 236 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 SLC30A3Q99726 388 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 REPIN1Q9BWE0 567 aaKnown RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 YIPF2Q9BWQ6 316 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 RBCK1Q9BYM8 510 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 DEPPQ9NTK1 212 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 ZNHIT6Q9NWK9 470 aaKnown RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 LRFN1Q9P244 771 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TAC3Q9UHF0 121 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TEKT2Q9UIF3 430 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 METRNQ9UJH8 293 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TSR3Q9UJK0 312 aaKnown RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 ZNF223Q9UK11 482 aaPredicted RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 INTUQ9ULD6 942 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 TTC7AQ9ULT0 858 aaPredicted RBP9.72□□□□□ -0.85
SF3B3-204ENST00000563739 EFR3BQ9Y2G0 817 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 PLEKHA6Q9Y2H5 1048 aa9.72□□□□□ -0.85
SF3B3-204ENST00000563739 MXRA5Q9NR99 2828 aa9.71□□□□□ -0.85
SF3B3-204ENST00000563739 A0A0G2JMM0 328 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 A0A1W2PPB8 328 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 A0A1W2PRS3 328 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 TCRBV7S2A1N4TA0A589 114 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 FEZF1A0PJY2 475 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 MACROD2A1Z1Q3 448 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 KIR3DP1A8MWS1 328 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 FOXO6A8MYZ6 492 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 PRMT5O14744 637 aaPredicted RBP9.71□□□□□ -0.86
SF3B3-204ENST00000563739 HS6ST1O60243 411 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 NIPSNAP2O75323 286 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 RDH16O75452 317 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 APOA4P06727 396 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 FOSL1P15407 271 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 CD46P15529 392 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 CMPK1P30085 196 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 TRHRP34981 398 aaPredicted RBP9.71□□□□□ -0.86
SF3B3-204ENST00000563739 PTGS2P35354 604 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 ADH7P40394 386 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 ITGA8P53708 1063 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 AP2B1P63010 937 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 RELAQ04206 551 aa9.71□□□□□ -0.86
SF3B3-204ENST00000563739 PRDX1Q06830 199 aaKnown RBP9.71□□□□□ -0.86
SF3B3-204ENST00000563739 KLF1Q13351 362 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms