RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SELENOSQ9BQE4 189 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 C1QTNF3Q9BXJ4 246 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 GSTO2Q9H4Y5 243 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 PELI2Q9HAT8 420 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 TNFRSF12AQ9NP84 129 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 SEMA4BQ9NPR2 832 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 AKAP7Q9P0M2 348 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 OPTCQ9UBM4 332 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 DHCR7Q9UBM7 475 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 GRID1Q9ULK0 1009 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 PTPRQQ9UMZ3 2332 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 SNX7Q9UNH6 387 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 RUVBL1Q9Y265 456 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 RNF11Q9Y3C5 154 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 TMEM184BQ9Y519 407 aaPredicted RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 PCDHGA7Q9Y5G6 932 aa9.35□□□□□ -0.91
CLK3-208ENST00000562626 TNRC6AQ8NDV7 1962 aaKnown RBP9.35□□□□□ -0.91
CLK3-208ENST00000562626 KCNE1BA0A087WTH5 132 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 TRBC2A0A5B9 178 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 UBFD1O14562 309 aaKnown RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 OR1F1O43749 312 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SCRG1O75711 98 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 C1GALT1C1LP0DN25 315 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 GNAZP19086 355 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 WT1P19544 449 aaPredicted RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 F8A1P23610 371 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ALDH3A1P30838 453 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 RORAP35398 523 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SCTRP47872 440 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 CCT5P48643 541 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 PIK3CGP48736 1102 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 PRKAA2P54646 552 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ITGA1P56199 1179 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 RAB15P59190 212 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 HERVK_113P63132 956 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 CYP4F2P78329 520 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 PRTGQ2VWP7 1150 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 XKR6Q5GH73 641 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 TCHHL1Q5QJ38 904 aaPredicted RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 WASHC2DQ5SRD0 308 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ZNF678Q5SXM1 525 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 C1orf189Q5VU69 101 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 FAM199XQ6PEV8 388 aaPredicted RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 PRSS41Q7RTY9 318 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 VASH2Q86V25 355 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 DTX1Q86Y01 620 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 TMEM126BQ8IUX1 230 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 C10orf107Q8IVU9 208 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.34□□□□□ -0.91
CLK3-208ENST00000562626 MFSD9Q8NBP5 474 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 KCT2Q8NC54 265 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 CREB3L4Q8TEY5 395 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 L3HYPDHQ96EM0 354 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ZNF578Q96N58 590 aaPredicted RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 SMC6Q96SB8 1091 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SH3GL2Q99962 352 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SARGQ9BW04 601 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ERVK-6Q9BXR3 956 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ULBP3Q9BZM4 244 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 KLHL31Q9H511 634 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 CCDC86Q9H6F5 360 aaKnown RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 NOL11Q9H8H0 719 aaKnown RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 IPPKQ9H8X2 491 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 CNOT10Q9H9A5 744 aaKnown RBP9.34□□□□□ -0.91
CLK3-208ENST00000562626 MLXIPLQ9NP71 852 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 SLC22A11Q9NSA0 550 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 GPRC5BQ9NZH0 403 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 COPG2Q9UBF2 871 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 DKK4Q9UBT3 224 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ACSL6Q9UKU0 697 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 RAXQ9Y2V3 346 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 KCNE2Q9Y6J6 123 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 ZFYVE26Q68DK2 2539 aa9.34□□□□□ -0.91
CLK3-208ENST00000562626 FITM1A5D6W6 292 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 TERTO14746 1132 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 FFAR3O14843 346 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CLGNO14967 610 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 GPR42O15529 346 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 ZSCAN9O15535 394 aaPredicted RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 ZZEF1O43149 2961 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 FOXS1O43638 330 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CNOT3O75175 753 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 DNAJB6O75190 326 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 KATNA1O75449 491 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CAPN1P07384 714 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 MYZAPP0CAP1 466 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 MYL2P10916 166 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CPA3P15088 417 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 EPB42P16452 691 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 IMPDH1P20839 514 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CASP2P42575 452 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 WDR4P57081 412 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 ERVPABLB-1P60509 514 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 MAGOHP61326 146 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 RPS15AP62244 130 aaKnown RBP9.33□□□□□ -0.92
CLK3-208ENST00000562626 RELAQ04206 551 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 PCDH1Q08174 1060 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CLN3Q13286 438 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 SLC9A5Q14940 896 aa9.33□□□□□ -0.92
CLK3-208ENST00000562626 CCDC153Q494R4 210 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms