RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EFHD1Q9BUP0 239 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EFCAB11Q9BUY7 163 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EDEM2Q9BV94 578 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 C1QTNF2Q9BXJ5 285 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 C20orf27Q9GZN8 174 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 SEMA6AQ9H2E6 1030 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 TRPV4Q9HBA0 871 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 ACTR10Q9NZ32 417 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 EMCNQ9ULC0 261 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 FZD4Q9ULV1 537 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 U3KQV3 271 aa5.25□□□□□ -1.57
VPS13C-209ENST00000560637 WDR81Q562E7 1941 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SPTBN4Q9H254 2564 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 C4orf47A7E2U8 309 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TPST2O60704 377 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TCEA3O75764 348 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 C1orf105O95561 183 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 F10P00742 488 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 GSTM1P09488 218 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 C1GALT1C1LP0DN25 315 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ATP6V1B2P21281 511 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ITPKBP27987 946 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 BUD31P41223 144 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SCTRP47872 440 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 CCT8P50990 548 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 RPS26P62854 115 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SKP1P63208 163 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 MAD2L1Q13257 205 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TRIP10Q15642 601 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TPRG1LQ5T0D9 272 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ICE2Q659A1 982 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 C16orf89Q6UX73 402 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 FRMD7Q6ZUT3 714 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 C16orf62Q7Z3J2 963 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 WDR53Q7Z5U6 358 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PDZD3Q86UT5 571 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SPATS2Q86XZ4 545 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 RELL1Q8IUW5 271 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 VANGL1Q8TAA9 524 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PYDC1Q8WXC3 89 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ECHDC3Q96DC8 303 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 COQ10AQ96MF6 247 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 RNF145Q96MT1 663 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 QRFPRQ96P65 431 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 KCNH6Q9H252 994 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ALG2Q9H553 416 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ZCCHC3Q9NUD5 404 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 KIF17Q9P2E2 1029 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SNX7Q9UNH6 387 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 MRPS33Q9Y291 106 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 OARD1Q9Y530 152 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 DNAJC15Q9Y5T4 150 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 RNF215Q9Y6U7 377 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 CACNA1CQ13936 2221 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 CCDC189A1A4V9 331 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 A6NL46 340 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 G3V2L1 256 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SGK494L7N484 410 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SPINT1O43278 529 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 B3GALT2O43825 422 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PEX14O75381 377 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PRKRAO75569 313 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 UBXN7O94888 489 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 OPN1SWP03999 348 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 MTHFD1P11586 935 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 EEF1B2P24534 225 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 IMPA1P29218 277 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 HNMTP50135 292 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SUOXP51687 545 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 NCBP2P52298 156 aaKnown RBP eCLIP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PTPN5P54829 565 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 STXBP1P61764 594 aaKnown RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PPP1CAP62136 330 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SHC2P98077 582 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 MC1RQ01726 317 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 NDUFA9Q16795 377 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TYSND1Q2T9J0 566 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 CYP27C1Q4G0S4 372 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM52BQ4KMG9 183 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PYCR3Q53H96 274 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SLC2A7Q6PXP3 512 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 DHRS13Q6UX07 377 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 DHDDSQ86SQ9 333 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 FAM217AQ8IXS0 508 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 KIRREL3Q8IZU9 778 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ARL14Q8N4G2 192 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 KAT2AQ92830 837 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 RAB8BQ92930 207 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 USP7Q93009 1102 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ZDHHC12Q96GR4 267 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM74Q96NL1 305 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 PTCHD1Q96NR3 888 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ELF4Q99607 663 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SLC25A23Q9BV35 468 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SLC12A9Q9BXP2 914 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 CHRDQ9H2X0 955 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 SERTAD3Q9UJW9 196 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 ACSL6Q9UKU0 697 aa5.24□□□□□ -1.57
VPS13C-209ENST00000560637 DMTF1Q9Y222 760 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms