RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RBM39Q14498 530 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 KRT81Q14533 505 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 P2RY6Q15077 328 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 RBBP7Q16576 425 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ZC2HC1CQ53FD0 456 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 FAM76BQ5HYJ3 339 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 DDX59Q5T1V6 619 aaKnown RBP eCLIP1.48□□□□□ -2.17
USP3-209ENST00000558925 SPOUT1Q5T280 376 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 KCTD11Q693B1 232 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 KLHL10Q6JEL2 608 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 UGT3A1Q6NUS8 523 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ZCCHC12Q6PEW1 402 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CNSTQ6PJW8 725 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 FAM43BQ6ZT52 329 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 SLC16A9Q7RTY1 509 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PRSS42Q7Z5A4 293 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CPEB2Q7Z5Q1 589 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 RABEPKQ7Z6M1 372 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SMIM29Q86T20 159 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PIGZQ86VD9 579 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ANKRD46Q86W74 232 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SIAH3Q8IW03 269 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ZC3H3Q8IXZ2 948 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 KLHDC8AQ8IYD2 350 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NDUFAF2Q8N183 169 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 MAB21L3Q8N8X9 362 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NOA1Q8NC60 698 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 PPFIBP2Q8ND30 876 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 KLHDC9Q8NEP7 349 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 DMBX1Q8NFW5 382 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 OR52E1Q8NGJ3 308 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 URGCPQ8TCY9 931 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 UBLCP1Q8WVY7 318 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 PIK3R3Q92569 461 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CCDC47Q96A33 483 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 TMEM143Q96AN5 459 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 DTD2Q96FN9 168 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PGM2Q96G03 612 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CDKN2AIPNLQ96HQ2 116 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NSL1Q96IY1 281 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 C4orf45Q96LM5 186 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CTAGE1Q96RT6 745 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ALKBH7Q9BT30 221 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 MIS12Q9H081 205 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 THAP2Q9H0W7 228 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 RNF121Q9H920 327 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 AKIRIN1Q9H9L7 192 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 FKRPQ9H9S5 495 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ZBTB20Q9HC78 741 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 RAVER2Q9HCJ3 691 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 SIX2Q9NPC8 291 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 FGF21Q9NSA1 209 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 INTS9Q9NV88 658 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 TMOD3Q9NYL9 352 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SPG21Q9NZD8 308 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NDUFA13Q9P0J0 144 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PSORS1C1Q9UIG5 152 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 MOSPD1Q9UJG1 213 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 LEF1Q9UJU2 399 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 ODF2LQ9ULJ1 636 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ISY1Q9ULR0 285 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 PA2G4Q9UQ80 394 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 EXOC6BQ9Y2D4 811 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 TMED7Q9Y3B3 224 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 TRAV18A0A075B6X5 111 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TRBV4-1A0A0J9YWV2 114 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 A0A1B0GUV1 79 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 BICDL2A1A5D9 508 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CCDC162PA2VCL2 907 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CCDC69A6NI79 296 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 SRRM4A7MD48 611 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 C2CD4DB7Z1M9 353 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TMEM150CB9EJG8 249 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TLR4O00206 839 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 NTN3O00634 580 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 BUB3O43684 328 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 KIF5CO60282 957 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 STAM2O75886 525 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 REC8O95072 547 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 STBD1O95210 358 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CXCL14O95715 111 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CRYAAP02489 173 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 C9P02748 559 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CHRNGP07510 517 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CD48P09326 243 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 FGF3P11487 239 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 B4GALT1P15291 398 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 AMD1P17707 334 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 TYMPP19971 482 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 PTMSP20962 102 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ALDH4A1P30038 563 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 CEACAM8P31997 349 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 SFTPDP35247 375 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 NR2C2P49116 596 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 HOXA1P49639 335 aaPredicted RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 CLK1P49759 484 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 DNA2P51530 1060 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 MAZP56270 477 aaKnown RBP1.47□□□□□ -2.17
USP3-209ENST00000558925 CLDN17P56750 224 aa1.47□□□□□ -2.17
USP3-209ENST00000558925 ERVFC1-1P60608 527 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms