RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TMEM88B	A6NKF7	163 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	HAS3	O00219	553 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLDN7	O95471	211 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CH25H	O95992	272 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	KLK1	P06870	262 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC10A3	P09131	477 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	UQCRC1	P31930	480 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	HUNK	P57058	714 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MLLT1	Q03111	559 aa	Predicted RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	AAK1	Q2M2I8	961 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	NHSL2	Q5HYW2	709 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CYS1	Q717R9	158 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	LRRC70	Q7Z2Q7	622 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLEC14A	Q86T13	490 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MRPS31	Q92665	395 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	COQ8B	Q96D53	544 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	WRAP53	Q9BUR4	548 aa	Known RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	ASPN	Q9BXN1	380 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPN1	Q9HCN4	374 aa	Predicted RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	PAK6	Q9NQU5	681 aa	Predicted RBP	4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	TAS2R7	Q9NYW3	318 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	MKLN1	Q9UL63	735 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	CFL2	Q9Y281	166 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPSM3	Q9Y4H4	160 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	N6AMT1	Q9Y5N5	214 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	FKBP7	Q9Y680	259 aa		4.84	□□□□□ -1.64
SYNE2-223	ENST00000557005	STRCP1	A6NGW2	1772 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PDPK1	O15530	556 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	EEF1E1	O43324	174 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	KDELR3	O43731	214 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ERAL1	O75616	437 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CAPNS1	P04632	268 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	C8G	P07360	202 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	NR2F6	P10588	404 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPR1	P46091	355 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	OMP	P47874	163 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	HTR6	P50406	440 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PPP5C	P53041	499 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	DSTN	P60981	165 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPS13	P62277	151 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	POU4F3	Q15319	338 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	TAZ	Q16635	292 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SHF	Q7M4L6	423 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	IQCH	Q86VS3	1027 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CADM2	Q8N3J6	435 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	C1orf52	Q8N6N3	182 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZFP41	Q8N8Y5	198 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	DNAJB8	Q8NHS0	232 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC38A4	Q969I6	547 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	MRPL48	Q96GC5	212 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC9A7	Q96T83	725 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PPIL3	Q9H2H8	161 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CFAP97	Q9P2B7	532 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	DLGAP1	O14490	977 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF195	O14628	629 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PTTG1	O95997	202 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	TGFB1	P01137	390 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	FYN	P06241	537 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARRB2	P32121	409 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPL4	P36578	427 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAPK9	P45984	424 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ASMT	P46597	345 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PITPNA	Q00169	270 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SRSF11	Q05519	484 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC3A1	Q07837	685 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CD47	Q08722	323 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	MAB21L1	Q13394	359 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CTSL3P	Q5NE16	218 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	LETMD1	Q6P1Q0	360 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	LBX2	Q6XYB7	198 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SH2D5	Q6ZV89	423 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	RD3	Q7Z3Z2	195 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	RNF180	Q86T96	592 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF433	Q8N7K0	673 aa	Predicted RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC43A3	Q8NBI5	491 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	WDR48	Q8TAF3	677 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PIGX	Q8TBF5	258 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM174	Q8WUU8	243 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	GEMIN6	Q8WXD5	167 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SMG7	Q92540	1137 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	POP5	Q969H6	163 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CIDEC	Q96AQ7	238 aa	Predicted RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	IMP4	Q96G21	291 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	DHRS1	Q96LJ7	313 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZFP3	Q96NJ6	502 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF382	Q96SR6	550 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CCM2	Q9BSQ5	444 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CCDC32	Q9BV29	185 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	KCNH6	Q9H252	994 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	FLRT1	Q9NZU1	646 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	UBQLN2	Q9UHD9	624 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	FBXW2	Q9UKT8	454 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	MKL2	Q9ULH7	1088 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	HSPB11	Q9Y547	144 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDHGA8	Q9Y5G5	932 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDHGA11	Q9Y5H2	935 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	CPSF4L	A6NMK7	179 aa	Known RBP	4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	SCAMP1	O15126	338 aa		4.83	□□□□□ -1.64
SYNE2-223	ENST00000557005	TLX2	O43763	284 aa	Predicted RBP	4.83	□□□□□ -1.64

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