RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MUS81Q96NY9 551 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 KLHL5Q96PQ7 755 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 PSMB7Q99436 277 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 NUDT16L1Q9BRJ7 211 aaKnown RBP3.04□□□□□ -1.92
SCFD1-216ENST00000555550 UBAC1Q9BSL1 405 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 SDCBP2Q9H190 292 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 EGLN3Q9H6Z9 239 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 XAB2Q9HCS7 855 aaKnown RBP3.04□□□□□ -1.92
SCFD1-216ENST00000555550 GTSE1Q9NYZ3 720 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 MORF4L1Q9UBU8 362 aa3.04□□□□□ -1.92
SCFD1-216ENST00000555550 C2CD4DB7Z1M9 353 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 BCL2L11O43521 198 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 CYTIPO60759 359 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 ATP6AP2O75787 350 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 PSMD10O75832 226 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 CELF2O95319 508 aaKnown RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 IGKV3-15P01624 115 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 KRTAP1-4P0C5Y4 121 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 CASP2P42575 452 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 IFI35P80217 286 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 PRPF4BQ13523 1007 aaKnown RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 TRA2AQ13595 282 aaKnown RBP eCLIP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 C15orf32Q32M92 178 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 SEL1L3Q68CR1 1132 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 ZNF584Q8IVC4 421 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 MFN1Q8IWA4 741 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 GBP7Q8N8V2 638 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 LRTM2Q8N967 370 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 OR10G7Q8NGN6 311 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 ROBO4Q8WZ75 1007 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 PGM2Q96G03 612 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 LINC00615Q96LM1 132 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 ATF6BQ99941 703 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 CHMP4AQ9BY43 222 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 PARLQ9H300 379 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 TBC1D13Q9NVG8 400 aa3.03□□□□□ -1.92
SCFD1-216ENST00000555550 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 THAP10Q9P2Z0 257 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-216ENST00000555550 ARID2Q68CP9 1835 aa3.03□□□□□ -1.93
SCFD1-216ENST00000555550 SRRM5B3KS81 715 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 G3V2L1 256 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 SPRY1O43609 319 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-216ENST00000555550 SNAP91O60641 907 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 DIAPH2O60879 1101 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 BAG3O95817 575 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 HPP00738 406 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 NR2F1P10589 423 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 IL4RP24394 825 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 HSD17B3P37058 310 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 ETV5P41161 510 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 ZFP36L2P47974 494 aaKnown RBP3.02□□□□□ -1.93
SCFD1-216ENST00000555550 RAB28P51157 221 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 RBPJQ06330 500 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 ACSM1Q08AH1 577 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 OR4C11Q6IEV9 310 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 RNF130Q86XS8 419 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-216ENST00000555550 CCDC63Q8NA47 563 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 HDAC11Q96DB2 347 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 ACTL8Q9H568 366 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 DNAJC4Q9NNZ3 241 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 STYXL1Q9Y6J8 313 aa3.02□□□□□ -1.93
SCFD1-216ENST00000555550 NPHP3Q7Z494 1330 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 PASKQ96RG2 1323 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 IGLV4-3A0A075B6K6 122 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 IQCMA0A1B0GVH7 501 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 GALR3O60755 368 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-216ENST00000555550 SLCO2B1O94956 709 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 SERPING1P05155 500 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 MELTFP08582 738 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 OR52Z1P0C646 297 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 STAG3L1P0CL83 205 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 FOLR2P14207 255 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 GP9P14770 177 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 UBASH3AP57075 661 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 CALD1Q05682 793 aaKnown RBP3.01□□□□□ -1.93
SCFD1-216ENST00000555550 SRSF9Q13242 221 aaKnown RBP eCLIP3.01□□□□□ -1.93
SCFD1-216ENST00000555550 RBBP7Q16576 425 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 TMEM266Q2M3C6 531 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 EIPR1Q53HC9 387 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 ATP1A1-AS1Q5TC04 95 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 C3P1Q6ZMU1 363 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 IL17RELQ6ZVW7 336 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 ENOSF1Q7L5Y1 443 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 CATSPER3Q86XQ3 398 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 ANKRD13CQ8N6S4 541 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 RPLP0P6Q8NHW5 317 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 SPSB1Q96BD6 273 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 PYCR2Q96C36 320 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 ZNF558Q96NG5 402 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 SNX25Q9H3E2 840 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 RIMS4Q9H426 269 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-216ENST00000555550 PKD2L2Q9NZM6 624 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 IL36AQ9UHA7 158 aa3.01□□□□□ -1.93
SCFD1-216ENST00000555550 COL4A4P53420 1690 aaPredicted RBP3.01□□□□□ -1.93
SCFD1-216ENST00000555550 IL16Q14005 1332 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 SYNDIG1LA6NDD5 238 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 GPRIN2O60269 458 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 LRCH4O75427 683 aa3□□□□□ -1.93
SCFD1-216ENST00000555550 NXPH4O95158 308 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms