RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 TSPAN16Q9UKR8 245 aa4.59□□□□□ -1.67
SCFD1-209ENST00000553280 KCNK6Q9Y257 313 aa4.59□□□□□ -1.67
SCFD1-209ENST00000553280 RIPK3Q9Y572 518 aa4.59□□□□□ -1.67
SCFD1-209ENST00000553280 IGLV9-49A0A0B4J1Y8 123 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 C2orf92A0A1B0GVN3 265 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 TMEM129A0AVI4 362 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ANTXRLA6NF34 631 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CCL24O00175 119 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ATP6V0E1O15342 81 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CXCL14O95715 111 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 NR3C1P04150 777 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 LIFP15018 202 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 DESP17661 470 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ALDH4A1P30038 563 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ART1P52961 327 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 DVL1P1P54792 670 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 FKBP1BP68106 108 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 GCNT1Q02742 428 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ACKR1Q16570 336 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 GPR33Q49SQ1 333 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 C9orf57Q5W0N0 161 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CAPRIN2Q6IMN6 1127 aaKnown RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 MFSD7Q6UXD7 560 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 MARK2Q7KZI7 788 aaKnown RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CPEB2Q7Z5Q1 589 aaKnown RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 NAGSQ8N159 534 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ANKRD20A12PQ8NF67 263 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 WBP2Q969T9 261 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 RBM41Q96IZ5 413 aaKnown RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ST6GAL2Q96JF0 529 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 FAM111AQ96PZ2 611 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CDCA3Q99618 268 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 FAM213AQ9BRX8 229 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ZPBPQ9BS86 351 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 C1QTNF4Q9BXJ3 329 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 TEX13AQ9BXU3 409 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-209ENST00000553280 KRT23Q9C075 422 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 SLC39A8Q9C0K1 460 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 SHARPINQ9H0F6 387 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 TMEM245Q9H330 911 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ZDHHC6Q9H6R6 413 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 RNF121Q9H920 327 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CD93Q9NPY3 652 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 ACTR3BQ9P1U1 418 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 UBQLN2Q9UHD9 624 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 CCPG1Q9ULG6 757 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 KCNJ14Q9UNX9 436 aa4.58□□□□□ -1.68
SCFD1-209ENST00000553280 NPHP3Q7Z494 1330 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TRBV5-5A0A0J9YX44 114 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 M0R296 226 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TLR4O00206 839 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TXNL1O43396 289 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 SLC4A1P02730 911 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 RAF1P04049 648 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 ALPLP05186 524 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 YES1P07947 543 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 MMP10P09238 476 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 FRMD6-AS1P0C7T7 363 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 IGHV4-38-2P0DP08 117 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 GOT1P17174 413 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 LHCGRP22888 699 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 CDKN1AP38936 164 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 RABIFP47224 123 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 OR3A3P47888 321 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 RPP38P78345 283 aaKnown RBP4.57□□□□□ -1.68
SCFD1-209ENST00000553280 FHL1Q13642 323 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 ARMCX4Q5H9R4 360 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 UGT3A1Q6NUS8 523 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 C1orf186Q6ZWK4 172 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 ELMOD2Q8IZ81 293 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TDHQ8IZJ6 230 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 BATF2Q8N1L9 274 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 KLHDC1Q8N7A1 406 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 CCNYQ8ND76 341 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 OR52E1Q8NGJ3 308 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 SECTM1Q8WVN6 248 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 METTL21AQ8WXB1 218 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 PIK3R3Q92569 461 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 GGHQ92820 318 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 DTD2Q96FN9 168 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 MED30Q96HR3 178 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 ZNF583Q96ND8 569 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 DDX50Q9BQ39 737 aaKnown RBP4.57□□□□□ -1.68
SCFD1-209ENST00000553280 PSD2Q9BQI7 771 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 RHNO1Q9BSD3 238 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TRMT61BQ9BVS5 477 aaKnown RBP4.57□□□□□ -1.68
SCFD1-209ENST00000553280 NACAP1Q9BZK3 213 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 WWTR1Q9GZV5 400 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 C5orf66Q9H5L9 145 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 TFB2MQ9H5Q4 396 aaKnown RBP4.57□□□□□ -1.68
SCFD1-209ENST00000553280 UPF2Q9HAU5 1272 aaKnown RBP4.57□□□□□ -1.68
SCFD1-209ENST00000553280 KCNMB3Q9NPA1 279 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 DONSONQ9NYP3 566 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 SLC12A6Q9UHW9 1150 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 MAN1B1Q9UKM7 699 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 R4GN57 208 aa4.57□□□□□ -1.68
SCFD1-209ENST00000553280 CACNA1IQ9P0X4 2223 aa4.56□□□□□ -1.68
SCFD1-209ENST00000553280 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.56□□□□□ -1.68
SCFD1-209ENST00000553280 C16orf97H3BN30 126 aa4.56□□□□□ -1.68
SCFD1-209ENST00000553280 IKBKBO14920 756 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms