RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PRAMEF4O60810 478 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 NUDT17P0C025 328 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 PYGBP11216 843 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 GNAZP19086 355 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 EPORP19235 508 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 AGXTP21549 392 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 GRK3P35626 688 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 RPS18P62269 152 aaKnown RBP13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SNRPNP63162 240 aaKnown RBP13.46□□□□□ -0.25
PTCH1-226ENST00000553011 CYP4F2P78329 520 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SETDB1Q15047 1291 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 PDK4Q16654 411 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 FAM214AQ32MH5 1076 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 NKAIN1Q4KMZ8 207 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 YOD1Q5VVQ6 348 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-226ENST00000553011 PRAMEF9Q5VWM5 478 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SLCO4C1Q6ZQN7 724 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 LRRC70Q7Z2Q7 622 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 MFSD9Q8NBP5 474 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-226ENST00000553011 STARD8Q92502 1023 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 THAP11Q96EK4 314 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SLC45A3Q96JT2 553 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 EFHD1Q9BUP0 239 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SARGQ9BW04 601 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 PPCSQ9HAB8 311 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 SLC22A11Q9NSA0 550 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 KCND3Q9UK17 655 aa13.46□□□□□ -0.25
PTCH1-226ENST00000553011 MRPS2Q9Y399 296 aaKnown RBP13.46□□□□□ -0.25
PTCH1-226ENST00000553011 KCNE1BA0A087WTH5 132 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 NKX2-8O15522 239 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 CDH16O75309 829 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 SBK3P0C264 359 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 C1GALT1C1LP0DN25 315 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 KRT15P19012 456 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 PTPN4P29074 926 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 SCTRP47872 440 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 OR1D4P47884 311 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ALDH18A1P54886 795 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 DCDP81605 110 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 SLBPQ14493 270 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 RASA2Q15283 850 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 MUM1Q2TAK8 710 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 FAM69BQ5VUD6 431 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 C16orf46Q6P387 395 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ASPGQ86U10 573 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ARHGEF39Q8N4T4 335 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 MREGQ8N565 214 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 PTGR2Q8N8N7 351 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ENDOVQ8N8Q3 282 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ACMSDQ8TDX5 336 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 SNRNP27Q8WVK2 155 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 TM4SF19Q96DZ7 209 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 DPH2Q9BQC3 489 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 MRPL57Q9BQC6 102 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 AIF1LQ9BQI0 150 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 MRPL46Q9H2W6 279 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 ACTL8Q9H568 366 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 RRAGDQ9NQL2 400 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 GEMIN8Q9NWZ8 242 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 GPRC5BQ9NZH0 403 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 TMEM216Q9P0N5 145 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 OPTCQ9UBM4 332 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 LHX6Q9UPM6 363 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 FARSAQ9Y285 508 aaKnown RBP13.45□□□□□ -0.26
PTCH1-226ENST00000553011 PCDHGA6Q9Y5G7 932 aa13.45□□□□□ -0.26
PTCH1-226ENST00000553011 LOC400499M0QZD8 3231 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 ZNF891A8MT65 544 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 C9J4A7 227 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 K7EPI3 171 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TXNDC9O14530 226 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 CLGNO14967 610 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 CNOT3O75175 753 aaKnown RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 SIX3O95343 332 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TUBBP07437 444 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 PRKAR1AP10644 381 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 EMP3P54852 163 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 FOXL2P58012 376 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 RPS15P62841 145 aaKnown RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 IFFO1Q0D2I5 559 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 NCF4Q15080 339 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 RBBP5Q15291 538 aaKnown RBP13.44□□□□□ -0.26
PTCH1-226ENST00000553011 ATP1A1-AS1Q5TC04 95 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 MLIPQ5VWP3 458 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 ATG9BQ674R7 924 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 COX15Q7KZN9 410 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 GPR155Q7Z3F1 870 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TMEM151BQ8IW70 566 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TMEM151AQ8N4L1 468 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TBC1D19Q8N5T2 526 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 TEX9Q8N6V9 391 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 ANKRD53Q8N9V6 530 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 ZSCAN1Q8NBB4 408 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 KCT2Q8NC54 265 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 CAMKVQ8NCB2 501 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 SLC13A3Q8WWT9 602 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 PHF21BQ96EK2 531 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 MOCOSQ96EN8 888 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 CAPS2Q9BXY5 557 aa13.44□□□□□ -0.26
PTCH1-226ENST00000553011 GPR87Q9BY21 358 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms