RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CXorf51AA0A1B0GTR3 108 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TCRBV5S2A0A599 114 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PCNX2A6NKB5 2137 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TARM1B6A8C7 271 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 NR5A2O00482 541 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CDX4O14627 284 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KHNYNO15037 678 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PLRG1O43660 514 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PMPCBO75439 489 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ANXA9O76027 345 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 POP4O95707 220 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 AP2A1O95782 977 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 NDST3O95803 873 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 APOA1P02647 267 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PRNPP04156 253 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 MTHFD1P11586 935 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TPH1P17752 444 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PKLRP30613 574 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CAPRIN1Q14444 709 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 USP10Q14694 798 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 GRM3Q14832 879 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 POU6F1Q14863 301 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ACOX1Q15067 660 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 MEP1AQ16819 746 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 RSPO4Q2I0M5 234 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KCTD11Q693B1 232 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLC23A3Q6PIS1 610 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PARS2Q7L3T8 475 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PLD3Q8IV08 490 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PLPP6Q8IY26 295 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TEX26Q8N6G2 289 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DNAAF3Q8N9W5 541 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 OR52K1Q8NGK4 314 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FAR1Q8WVX9 515 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KLK6Q92876 244 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FATE1Q969F0 183 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 NXNL1Q96CM4 212 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 AURKBQ96GD4 344 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ALOXE3Q9BYJ1 711 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLIRPQ9GZT3 109 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 C12orf10Q9HB07 376 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CAPN10Q9HC96 672 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CMTM6Q9NX76 183 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 AAR2Q9Y312 384 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 NAALAD2Q9Y3Q0 740 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 BPTFQ12830 3046 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ANKRD36A6QL64 1941 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 A0A0J9YYE9 177 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 LRRC72A6NJI9 287 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PTGES3LE9PB15 166 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PSMD3O43242 534 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SNX2O60749 519 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TRIM16O95361 564 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 HPRP00739 348 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 MT-ND1P03886 318 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ALPLP05186 524 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLC35E2BP0CK96 405 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ENGP17813 658 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLC6A2P23975 617 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CSNK1EP49674 416 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CSRP3P50461 194 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 OR2B6P58173 313 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DEFA1P59665 94 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DEFA3P59666 94 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 NCS1P62166 190 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 BNC1Q01954 994 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DSC2Q02487 901 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FOXM1Q08050 763 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 EPS8Q12929 822 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DUSP7Q16829 419 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 DUOXA1Q1HG43 343 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KIF19Q2TAC6 998 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 COLEC12Q5KU26 742 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KIAA0895LQ68EN5 471 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ERN2Q76MJ5 926 aaKnown RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLC51BQ86UW2 128 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 KCNMB4Q86W47 210 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 GATAD2AQ86YP4 633 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FUNDC1Q8IVP5 155 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PGBD5Q8N414 524 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 IL17RDQ8NFM7 739 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TTC9Q92623 222 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SDCCAG3Q96C92 435 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 RDH12Q96NR8 316 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF300Q96RE9 604 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SEPHS2Q99611 448 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 GPR22Q99680 433 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 SLC25A51Q9H1U9 297 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TOR3AQ9H497 397 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 TRIM39Q9HCM9 518 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PAK1IP1Q9NWT1 392 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-216ENST00000552909 MAP10Q9P2G4 905 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FREM2Q5SZK8 3169 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 PCDH15Q96QU1 1955 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ZCWPW2A0A1B0GU75 182 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 A0A1W2PPC4 97 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ERI2A8K979 691 aaKnown RBP7.41□□□□□ -1.22
LIMA1-216ENST00000552909 ERVH48-1M5A8F1 160 aa7.41□□□□□ -1.22
LIMA1-216ENST00000552909 SLC1A7O00341 560 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms