RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 HEPACAM2A8MVW5 462 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF701M0R085 212 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 LZTS3O60299 673 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 SEMG1P04279 462 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 CDK4P11802 303 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF8P17098 575 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 LAPTM4AQ15012 233 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 RBM48Q5RL73 367 aaKnown RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 GPR107Q5VW38 600 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 ERICH5Q6P6B1 374 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 SHQ1Q6PI26 577 aaKnown RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 CEP68Q76N32 757 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF765Q7L2R6 523 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 TRMT11Q7Z4G4 463 aaKnown RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 R3HCC1LQ7Z5L2 792 aaKnown RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 CAMKMTQ7Z624 323 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 ADGRD2Q7Z7M1 963 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 LRRC56Q8IYG6 542 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 CHDHQ8NE62 594 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 OR9A1PQ8NGU1 263 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 COQ8BQ96D53 544 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 PHF12Q96QT6 1004 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 SGPP1Q9BX95 441 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 TRIM39Q9HCM9 518 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 TIMMDC1Q9NPL8 285 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 DEC1Q9P2X7 70 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 BTNL2Q9UIR0 455 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 C3orf18Q9UK00 162 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 RWDD3Q9Y3V2 267 aa17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 PCYT1BQ9Y5K3 369 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 KIF26AQ9ULI4 1882 aaPredicted RBP17.85■□□□□ 0.45
PRPF40B-208ENST00000548436 MGAT4DA6NG13 374 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 PCDH7O60245 1069 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 DIRAS1O95057 198 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CPNE6O95741 557 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 NUDT7P0C024 238 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 SLBPQ14493 270 aaKnown RBP eCLIP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 NFE2L1Q14494 772 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF234Q14588 700 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 LAIR2Q6ISS4 152 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 PSRC1Q6PGN9 363 aaPredicted RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CRTC3Q6UUV7 619 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 SYNPOQ8N3V7 929 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 PHOSPHO2Q8TCD6 241 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 HERVK_113Q902F9 699 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 HDAC2Q92769 488 aaKnown RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 WDR34Q96EX3 536 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CHST8Q9H2A9 424 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 ZDHHC4Q9NPG8 344 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 PRKAG2Q9UGJ0 569 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 FZD4Q9ULV1 537 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 ATG2AQ2TAZ0 1938 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 hCG_2039718K7EN88 272 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 MITFO75030 526 aaPredicted RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 POP7O75817 140 aaKnown RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 GBAP04062 536 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 POU2F2P09086 479 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 DCKP27707 260 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TTKP33981 857 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TPD52P55327 224 aaPredicted RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 VLDLRP98155 873 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 MEF2AQ02078 507 aaPredicted RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TAP2Q03519 686 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 DPTQ07507 201 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CD47Q08722 323 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 GAB1Q13480 694 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 GTF2H3Q13889 308 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 ELAVL3Q14576 367 aaKnown RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 C11orf91Q3C1V1 193 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF385BQ569K4 471 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 C6orf141Q5SZD1 244 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 OR2T5Q6IEZ7 315 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TMEM26Q6ZUK4 368 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CBLL1Q75N03 491 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 CYP4Z1Q86W10 505 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 NPAS3Q8IXF0 933 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 OR2T29Q8NH02 315 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TBC1D20Q96BZ9 403 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 LINC00615Q96LM1 132 aaPredicted RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 NAA50Q9GZZ1 169 aaKnown RBP17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 SPNS1Q9H2V7 528 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 TMEM245Q9H330 911 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 SH3BP4Q9P0V3 963 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 DYRK1BQ9Y463 629 aa17.84■□□□□ 0.45
PRPF40B-208ENST00000548436 DOCK9Q9BZ29 2069 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 TMX2-CTNND1H3BSU7 103 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ATE1O95260 518 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 NFATC1O95644 943 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 C1GALT1C1LP0DN25 315 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ACADLP28330 430 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 HPCAL1P37235 193 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ISL1P61371 349 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF691Q5VV52 312 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 BROXQ5VW32 411 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 XAF1Q6GPH4 301 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 GALNT18Q6P9A2 607 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 FAM83HQ6ZRV2 1179 aaPredicted RBP17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ARMCX6Q7L4S7 300 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 LAS2Q8IYD9 372 aa17.83■□□□□ 0.45
PRPF40B-208ENST00000548436 ZFP90Q8TF47 636 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms