RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PDPK1O15530 556 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 LATO43561 262 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 KDELR2P33947 212 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TALDO1P37837 337 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 MAP2K4P45985 399 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 VBP1P61758 197 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 RAB33AQ14088 237 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 SELPLGQ14242 412 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ANKFN1Q8N957 763 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TEFMQ96QE5 360 aaKnown RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 KAT8Q9H7Z6 458 aaKnown RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 ZNF334Q9HCZ1 680 aaPredicted RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 HEMK1Q9Y5R4 338 aaPredicted RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 LOC110117498-PIK3R3F6TDL0 507 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 PITPNM1O00562 1244 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 LAMP1P11279 417 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ZNF30P17039 623 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 RGS8P57771 180 aaPredicted RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 CYBRD1Q53TN4 286 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 CLEC12AQ5QGZ9 265 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 HACD2Q6Y1H2 254 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 RNF44Q7L0R7 432 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ENKURQ8TC29 256 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 WFDC5Q8TCV5 224 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ZNF641Q96N77 438 aaPredicted RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 KLF16Q9BXK1 252 aaPredicted RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 ITM2CQ9NQX7 267 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TRPS1Q9UHF7 1281 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 EFCAB9A8MZ26 197 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TFAP2AP05549 437 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 BMP2P12643 396 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 SMIM11AP58511 58 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 MGAT3Q09327 533 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 C6orf141Q5SZD1 244 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 SLC8B1Q6J4K2 584 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 LKAAEAR1Q8TD35 194 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 NETO1Q8TDF5 533 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TMEM203Q969S6 136 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 TCEAL4Q96EI5 215 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 SLC38A2Q96QD8 506 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 KCNS3Q9BQ31 491 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 POLR2J3Q9H1A7 115 aaKnown RBP15.17■□□□□ 0.02
CUX1-211ENST00000546411 MIR1-1HGQ9H1L0 117 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ZNF696Q9H7X3 374 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 SLC28A3Q9HAS3 691 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ELOVL2Q9NXB9 296 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 PTGFRNQ9P2B2 879 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ERVW-1Q9UQF0 538 aa15.17■□□□□ 0.02
CUX1-211ENST00000546411 ERI3O43414 337 aaKnown RBP15.16■□□□□ 0.02
CUX1-211ENST00000546411 CBFA2T3O75081 653 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 BMP7P18075 431 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 KELP23276 732 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 RPS3AP61247 264 aaKnown RBP15.16■□□□□ 0.02
CUX1-211ENST00000546411 GRM2Q14416 872 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 MBTPS1Q14703 1052 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 TAB1Q15750 504 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 VMACQ2NL98 169 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 CCDC157Q569K6 752 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 OR8J3Q8NGG0 315 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 FOXJ1Q92949 421 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 WBP2Q969T9 261 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 LMLNQ96KR4 655 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 KCNH6Q9H252 994 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 DNAAF2Q9NVR5 837 aaKnown RBP15.16■□□□□ 0.02
CUX1-211ENST00000546411 SMIM30A4D0T7 59 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 E7EQ34 232 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 FGF19O95750 216 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 MMP2P08253 660 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 SBK3P0C264 359 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 FPR1P21462 350 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 CCR7P32248 378 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 MAGEA12P43365 314 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 CSNK2BP67870 215 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 TUBA4AP68366 448 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 SMARCD3Q6STE5 483 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 TUBB1Q9H4B7 451 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 C3orf14Q9HBI5 128 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 CLEC4AQ9UMR7 237 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 GSTK1Q9Y2Q3 226 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 TAF1LQ8IZX4 1826 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 PLOD2O00469 737 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 NPPAP01160 153 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 TIGD6Q17RP2 521 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 CMPK2Q5EBM0 449 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 MANEALQ5VSG8 457 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 ZNF773Q6PK81 442 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 ZNF783Q6ZMS7 281 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.16■□□□□ 0.02
CUX1-211ENST00000546411 CAPSLQ8WWF8 208 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 SLC46A2Q9BY10 475 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 WDR26Q9H7D7 661 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 ADAP2Q9NPF8 381 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 C5AR2Q9P296 337 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 OR10H1Q9Y4A9 318 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 AP2A2O94973 939 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 VIPP01282 170 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 MTHFD2P13995 350 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 RGS1Q08116 209 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 PMS2P3Q13401 168 aa15.16■□□□□ 0.02
CUX1-211ENST00000546411 DDI2Q5TDH0 399 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms