RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 NKX6-1P78426 367 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 PMP22Q01453 160 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CDR2Q01850 454 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 OCA2Q04671 838 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 OLIG2Q13516 323 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NFE2L1Q14494 772 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 ODF1Q14990 250 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 MLANAQ16655 118 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TFDP3Q5H9I0 405 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 LDLRAP1Q5SW96 308 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 PRAMEF9Q5VWM5 478 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TXNRD3NBQ6F5E7 133 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 KLHL10Q6JEL2 608 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 DNAJC24Q6P3W2 148 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 DCUN1D2Q6PH85 259 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 SARM1Q6SZW1 724 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 SPESP1Q6UW49 350 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TMCO3Q6UWJ1 677 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 C16orf47Q6ZP98 133 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TTLL10Q6ZVT0 673 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NCCRP1Q6ZVX7 275 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NDUFAF7Q7L592 441 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CDC20BQ86Y33 519 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 LYSMD2Q8IV50 215 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TEX26Q8N6G2 289 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 SIRT6Q8N6T7 355 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 LINC00482Q8N8I6 264 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TTC29Q8NA56 475 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 FBXO15Q8NCQ5 510 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 GPR26Q8NDV2 337 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CALML6Q8TD86 181 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 DTX3LQ8TDB6 740 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NELFBQ8WX92 580 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 PSMF1Q92530 271 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 HDAC10Q969S8 669 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 LRRC46Q96FV0 321 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 MCEEQ96PE7 176 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 SYT3Q9BQG1 590 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 GORASP1Q9BQQ3 440 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CCM2Q9BSQ5 444 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CRB3Q9BUF7 120 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 UCK2Q9BZX2 261 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 SPRTNQ9H040 489 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 WWP1Q9H0M0 922 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 OR10A5Q9H207 317 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TP63Q9H3D4 680 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 LIME1Q9H400 295 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 TFB2MQ9H5Q4 396 aaKnown RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 MKS1Q9NXB0 559 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 ZIM2Q9NZV7 527 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 ADAM22Q9P0K1 906 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NOCTQ9UK39 431 aaKnown RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 NPIPA1Q9UND3 350 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 PLCL2Q9UPR0 1127 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 RNF6Q9Y252 685 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 L3MBTL1Q9Y468 752 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CFAP20Q9Y6A4 193 aaKnown RBP3.88□□□□□ -1.79
SNHG1-220ENST00000544550 CCDC168Q8NDH2 2452 aa3.88□□□□□ -1.79
SNHG1-220ENST00000544550 DOCK4Q8N1I0 1966 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 A0A0J9YY10 115 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 FAM170AA1A519 330 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 MGAT4DA6NG13 374 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 LRRC10BA6NIK2 292 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 VSTM2BA6NLU5 285 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 A6NNC1 897 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 IFRD1O00458 451 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 BTN3A3O00478 584 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 BTN3A1O00481 513 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 CES2O00748 559 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 DSCR3O14972 297 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 CRLF1O75462 422 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 RNF8O76064 485 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 SUN1O94901 812 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 SNUPNO95149 360 aaKnown RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 APOL3O95236 402 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 SCGB1D2O95969 90 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 MT-CYBP00156 380 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 F10P00742 488 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 TPOP07202 933 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 COX6A1P12074 109 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 ZNF24P17028 368 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 BMP7P18075 431 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 UGT1A1P22309 533 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 APEX1P27695 318 aaKnown RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 PBLDP30039 288 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 PTGS2P35354 604 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 CD86P42081 329 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 KIR2DL3P43628 341 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 FOXL2P58012 376 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 DCAF7P61962 342 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 APBA1Q02410 837 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 ZNF33BQ06732 778 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 KLC1Q07866 573 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 ITGA9Q13797 1035 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 DPYSQ14117 519 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 GRM7Q14831 915 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 DEFB110Q30KQ9 67 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 FAM214AQ32MH5 1076 aa3.87□□□□□ -1.79
SNHG1-220ENST00000544550 PPP6R3Q5H9R7 873 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-220ENST00000544550 TCTE1Q5JU00 501 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms