RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MLYCDO95822 493 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 SLC16A8O95907 504 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 IFNB1P01574 187 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 APRTP07741 180 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 ABOP16442 354 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 XCR1P46094 333 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 TAP2Q03519 686 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 KLHL38Q2WGJ6 581 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 ACSBG2Q5FVE4 666 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 RNFT1Q5M7Z0 435 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 MFSD4BQ5TF39 518 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 MEX3BQ6ZN04 569 aaKnown RBP16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 VN1R4Q7Z5H5 301 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 LRRC56Q8IYG6 542 aaPredicted RBP16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 UBL4BQ8N7F7 174 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 RNF214Q8ND24 703 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 OR51Q1Q8NH59 317 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 ZNF480Q8WV37 535 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 C19orf25Q9UFG5 118 aaPredicted RBP16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 ASB1Q9Y576 335 aa16.79■□□□□ 0.28
CLSTN3-214ENST00000542663 EML6Q6ZMW3 1958 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 GABRR3A8MPY1 467 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 MIF4GDA9UHW6 222 aaKnown RBP16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 E9PLN8 166 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 CCNDBP1O95273 360 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 SP1P08047 785 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 CD46P15529 392 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 SESN2P58004 480 aaPredicted RBP16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 KCNJ11Q14654 390 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 NDUFA9Q16795 377 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 TYSND1Q2T9J0 566 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 SPNS2Q8IVW8 549 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 GHDCQ8N2G8 530 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 TMEM178AQ8NBL3 297 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 M1APQ8TC57 530 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 MACROD1Q9BQ69 325 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 VKORC1Q9BQB6 163 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 MMP25Q9NPA2 562 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 UTP6Q9NYH9 597 aaKnown RBP16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 HCN3Q9P1Z3 774 aa16.78■□□□□ 0.28
CLSTN3-214ENST00000542663 SPG11Q96JI7 2443 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 GOLGA8KD6RF30 607 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 GOLGA8TH3BQL2 631 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 SMAPO00193 183 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 DIAPH2O60879 1101 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 FTCDO95954 541 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 IL1RNP18510 177 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 AGTR2P50052 363 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 PTK6Q13882 451 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 EXT1Q16394 746 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 ZNF468Q5VIY5 522 aaPredicted RBP16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 RAD9BQ6WBX8 426 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 ADCK2Q7Z695 626 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 ACRBPQ8NEB7 543 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 CA5BP1Q8WTZ4 195 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 SDCCAG3Q96C92 435 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 ABCF3Q9NUQ8 709 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 CRYL1Q9Y2S2 319 aa16.77■□□□□ 0.28
CLSTN3-214ENST00000542663 ZNF407Q9C0G0 2248 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 H7BY64 318 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 SGK494L7N484 410 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 VAPBO95292 243 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 ESR1P03372 595 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 CATP04040 527 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 IGFBP2P18065 325 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 HSD17B2P37059 387 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 BCL6P41182 706 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 ADARP55265 1226 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 ABATP80404 500 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 SFT2D3Q587I9 215 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 SLC25A25Q6KCM7 469 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 TMEM214Q6NUQ4 689 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 PAPD4Q6PIY7 484 aaKnown RBP16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 CES3Q6UWW8 571 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 PCGF5Q86SE9 256 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 ZNF227Q86WZ6 799 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 PDSS2Q86YH6 399 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 REXO1L1PQ8IX06 675 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 OTUD6BQ8N6M0 293 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 MFSD3Q96ES6 412 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 HES6Q96HZ4 224 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 CCDC138Q96M89 665 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 PRAP1Q96NZ9 151 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 SLC30A3Q99726 388 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 IL22Q9GZX6 179 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 FAM114A2Q9NRY5 505 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 LRFN1Q9P244 771 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 ZNF148Q9UQR1 794 aa16.76■□□□□ 0.27
CLSTN3-214ENST00000542663 TSPAN12O95859 305 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 ZSCAN5DPP0CG00 497 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 CHRM3P20309 590 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 RHAGQ02094 409 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 OC90Q02509 493 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 MARVELD2Q8N4S9 558 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 CPSF7Q8N684 471 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 FAM98AQ8NCA5 519 aaKnown RBP16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 FBXO15Q8NCQ5 510 aaPredicted RBP16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 C1orf54Q8WWF1 131 aa16.75■□□□□ 0.27
CLSTN3-214ENST00000542663 EBNA1BP2Q99848 306 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms