RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MFSD9Q8NBP5 474 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 OR4F6Q8NGB9 312 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 RERGQ96A58 199 aaPredicted RBP16.38■□□□□ 0.21
LIG1-204ENST00000542460 CDK15Q96Q40 435 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 TAAR9Q96RI9 348 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 ASPSCR1Q9BZE9 553 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 RNF11Q9Y3C5 154 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 PMS2P1A4D2B8 440 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 H0YGG7 62 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 OR2B3O76000 313 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 SERPINE1P05121 402 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 GRK2P25098 689 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 GSTM2P28161 218 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 AHRP35869 848 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ETV5P41161 510 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ITGA1P56199 1179 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 VSX2P58304 361 aaPredicted RBP16.37■□□□□ 0.21
LIG1-204ENST00000542460 ERVPABLB-1P60509 514 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ARF3P61204 181 aaPredicted RBP16.37■□□□□ 0.21
LIG1-204ENST00000542460 GABREP78334 506 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 CHI3L2Q15782 390 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 GGTA1PQ4G0N0 100 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 DCAF12Q5T6F0 453 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 TMEM164Q5U3C3 297 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 MED27Q6P2C8 311 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 CEACAM20Q6UY09 585 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 GPRIN3Q6ZVF9 776 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 TTLQ8NG68 377 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 OR1L3Q8NH93 324 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 PRR11Q96HE9 360 aaPredicted RBP16.37■□□□□ 0.21
LIG1-204ENST00000542460 SEC16BQ96JE7 1060 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ZNF285Q96NJ3 590 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ZPBPQ9BS86 351 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 DDA1Q9BW61 102 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 APMAPQ9HDC9 416 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ENAMQ9NRM1 1142 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ZFP69BQ9UJL9 534 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ANGPTL2Q9UKU9 493 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 ZNF490Q9ULM2 529 aaPredicted RBP16.37■□□□□ 0.21
LIG1-204ENST00000542460 NEUROG3Q9Y4Z2 214 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 AP1M2Q9Y6Q5 423 aa16.37■□□□□ 0.21
LIG1-204ENST00000542460 A0A1B0GTL3 188 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 H0YIV9 168 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 TXNDC9O14530 226 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 ESRRBO95718 433 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 EIF2S1P05198 315 aaKnown RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 CHN1P15882 459 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 GALNT1Q10472 559 aaPredicted RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 RCN2Q14257 317 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 CPSF6Q16630 551 aaKnown RBP eCLIP16.36■□□□□ 0.21
LIG1-204ENST00000542460 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.36■□□□□ 0.21
LIG1-204ENST00000542460 WASHC2DQ5SRD0 308 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 SYVN1Q86TM6 617 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 LAS2Q8IYD9 372 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 ZNF655Q8N720 491 aaPredicted RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 ANKRD53Q8N9V6 530 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 TRPV3Q8NET8 790 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 AGAP11Q8TF27 550 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 SLC13A3Q8WWT9 602 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 REPS1Q96D71 796 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 TEFMQ96QE5 360 aaKnown RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 CTRCQ99895 268 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 B3GNT4Q9C0J1 378 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 SPRTNQ9H040 489 aaPredicted RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 SYNPO2LQ9H987 977 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 EML4Q9HC35 981 aaKnown RBP16.36■□□□□ 0.21
LIG1-204ENST00000542460 MID1IP1Q9NPA3 183 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 IRAK4Q9NWZ3 460 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 TRPS1Q9UHF7 1281 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 ZNF225Q9UK10 706 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 PCDHGA3Q9Y5H0 932 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 PCDHGA11Q9Y5H2 935 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 KNTC1P50748 2209 aa16.36■□□□□ 0.21
LIG1-204ENST00000542460 ANKDD1BA6NHY2 528 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 H3BMH7 237 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 UBFD1O14562 309 aaKnown RBP16.35■□□□□ 0.21
LIG1-204ENST00000542460 OR4F21O95013 312 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TNFSF15O95150 251 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 CTSBP07858 339 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 SPINK2P20155 84 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 BGNP21810 368 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 CCR10P46092 362 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 RTP5Q14D33 572 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 MANEAQ5SRI9 462 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 LETMD1Q6P1Q0 360 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TLDC1Q6P9B6 456 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 IGF2-ASQ6U949 168 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 VN1R4Q7Z5H5 301 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 ASPGQ86U10 573 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TRIM42Q8IWZ5 723 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 LSMEM2Q8N112 164 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 ARFGAP2Q8N6H7 521 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 CSNK1A1LQ8N752 337 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 CAMKVQ8NCB2 501 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 OR7G3Q8NG95 312 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 RAB3IL1Q8TBN0 382 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 USP7Q93009 1102 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 TM4SF19Q96DZ7 209 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 SLC46A1Q96NT5 459 aa16.35■□□□□ 0.21
LIG1-204ENST00000542460 NLNQ9BYT8 704 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms