RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	UBE2E3	Q969T4	207 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	TM4SF19	Q96DZ7	209 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	MAGEB10	Q96LZ2	347 aa	Predicted RBP	19.83	■□□□□ 0.77
CD44-222	ENST00000526025	FAM111A	Q96PZ2	611 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	TMEM237	Q96Q45	408 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	SH3GL2	Q99962	352 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	NTMT1	Q9BV86	223 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	NLN	Q9BYT8	704 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	IPPK	Q9H8X2	491 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	OXSM	Q9NWU1	459 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	STK38L	Q9Y2H1	464 aa		19.83	■□□□□ 0.77
CD44-222	ENST00000526025	KIAA0754	O94854	1291 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	TIAF1	O95411	115 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	LIPC	P11150	499 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	VARS	P26640	1264 aa	Known RBP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	SERPINB1	P30740	379 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	HNF4A	P41235	474 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ETV4	P43268	484 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ASPH	Q12797	758 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	PWP1	Q13610	501 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	DOC2A	Q14183	400 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	SLBP	Q14493	270 aa	Known RBP eCLIP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	HIST2H2AC	Q16777	129 aa	Predicted RBP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	FAM214A	Q32MH5	1076 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	LIPM	Q5VYY2	423 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	HIST2H2AA3	Q6FI13	130 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	RHBDD2	Q6NTF9	364 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	TMIGD1	Q6UXZ0	262 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	DTX1	Q86Y01	620 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	PLD3	Q8IV08	490 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	CSNK1A1L	Q8N752	337 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	L3MBTL4	Q8NA19	623 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	CCDC63	Q8NA47	563 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	CAMKV	Q8NCB2	501 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ARMC2	Q8NEN0	867 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	MDM1	Q8TC05	714 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	PROKR1	Q8TCW9	393 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	DPH2	Q9BQC3	489 aa	Predicted RBP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	NDC1	Q9BTX1	674 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	SPRTN	Q9H040	489 aa	Predicted RBP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	SPNS1	Q9H2V7	528 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	SYNPO2L	Q9H987	977 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ACTR5	Q9H9F9	607 aa	Predicted RBP	19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ZFP69B	Q9UJL9	534 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	TSC22D4	Q9Y3Q8	395 aa		19.82	■□□□□ 0.76
CD44-222	ENST00000526025	ACACB	O00763	2458 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	FEZF1	A0PJY2	475 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF749	O43361	778 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	OR1F1	O43749	312 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	LCMT2	O60294	686 aa	Known RBP	19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ZWINT	O95229	277 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF28	P17035	718 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	CD22	P20273	847 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	PCLAF	Q15004	111 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	GGTA1P	Q4G0N0	100 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	UNC50	Q53HI1	259 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	GRHL2	Q6ISB3	625 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ASPG	Q86U10	573 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ESX1	Q8N693	406 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF740	Q8NDX6	193 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	TRPV3	Q8NET8	790 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	FAM117A	Q9C073	453 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	RHBG	Q9H310	441 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	C12orf65	Q9H3J6	166 aa	Known RBP	19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ACBD3	Q9H3P7	528 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	ZBTB26	Q9HCK0	441 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	IRAK4	Q9NWZ3	460 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	SLC17A7	Q9P2U7	560 aa		19.81	■□□□□ 0.76
CD44-222	ENST00000526025	TPR	P12270	2363 aa	Known RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	C1QTNF9B	B2RNN3	333 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025		H3BQF6	201 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	OR7A17	O14581	309 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	MLYCD	O95822	493 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	OTC	P00480	354 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	CTSB	P07858	339 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	SLC35G6	P0C7Q6	338 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	C1QTNF9	P0C862	333 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	RORA	P35398	523 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	MEF2A	Q02078	507 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	CLC	Q05315	142 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	C10orf62	Q5T681	223 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	C6orf15	Q6UXA7	325 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF517	Q6ZMY9	492 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	LAS2	Q8IYD9	372 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	NLGN4X	Q8N0W4	816 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ARHGEF39	Q8N4T4	335 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	KDF1	Q8NAX2	398 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF248	Q8NDW4	579 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	NT5C	Q8TCD5	201 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	PPP4R1	Q8TF05	950 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	MVB12A	Q96EY5	273 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	NOL11	Q9H8H0	719 aa	Known RBP	19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ACTR8	Q9H981	624 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ADGRE2	Q9UHX3	823 aa		19.8	■□□□□ 0.76
CD44-222	ENST00000526025	ASPM	Q8IZT6	3477 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	HYKK	A2RU49	373 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	TLX3	O43711	291 aa	Predicted RBP	19.79	■□□□□ 0.76
CD44-222	ENST00000526025	TRIM13	O60858	407 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	SUPT7L	O94864	414 aa		19.79	■□□□□ 0.76

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