RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 RGS14O43566 566 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 FOXD2O60548 495 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 RSL1D1O76021 490 aaKnown RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PDYNP01213 254 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 CKMT1AP12532 417 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 EZRP15311 586 aaKnown RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 TYRP1P17643 537 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SDHBP21912 280 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PRPH2P23942 346 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 GRIA3P42263 894 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SCTRP47872 440 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 DUSP3P51452 185 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 YBX1P67809 324 aaKnown RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SF3A3Q12874 501 aaKnown RBP eCLIP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 IMPG1Q17R60 797 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 LSM12Q3MHD2 195 aaKnown RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 FAM219BQ5XKK7 198 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 LARP4Q71RC2 724 aaKnown RBP eCLIP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 ADCK2Q7Z695 626 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SPRED1Q7Z699 444 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 KIAA2013Q8IYS2 634 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 MARVELD3Q96A59 401 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 ZUFSPQ96AP4 578 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 CCDC74AQ96AQ1 378 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PRR11Q96HE9 360 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 METTL2AQ96IZ6 378 aaKnown RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PPP3R2Q96LZ3 170 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 C3orf30Q96M34 536 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 RILPQ96NA2 401 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PRAP1Q96NZ9 151 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 OR52B2Q96RD2 323 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 DPH7Q9BTV6 452 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 EDEM2Q9BV94 578 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 ACPTQ9BZG2 426 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 ABCG4Q9H172 646 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SEMA6CQ9H3T2 930 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 WDR55Q9H6Y2 383 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 DMRT3Q9NQL9 472 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 MRGBPQ9NV56 204 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 NCDNQ9UBB6 729 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 TRIM33Q9UPN9 1127 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 CCL27Q9Y4X3 112 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 PTGDR2Q9Y5Y4 395 aa12.53□□□□□ -0.4
CPNE3-205ENST00000522240 MN1Q10571 1320 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-205ENST00000522240 SNRNP200O75643 2136 aaKnown RBP12.52□□□□□ -0.4
CPNE3-205ENST00000522240 GOLGA8QA0A0J9YX86 632 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 GOLGA8OA6NCC3 632 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 TLCD2A6NGC4 264 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 GOLGA8NF8WBI6 632 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 HAT1O14929 419 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 LSM1O15116 133 aaKnown RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 LINC00032P0C843 101 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 PCNAP12004 261 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 LBPP18428 481 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 MAGP20916 626 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 AHRP35869 848 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 RPS15AP62244 130 aaKnown RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 MEF2AQ02078 507 aaPredicted RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 SQSTM1Q13501 440 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 NR6A1Q15406 480 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 SF3A2Q15428 464 aaKnown RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 CSRP2Q16527 193 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 CLPPQ16740 277 aaPredicted RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 GUSBP11Q6P575 273 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 FIGLAQ6QHK4 219 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 Q6ZSR9 355 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 RNF44Q7L0R7 432 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 TRIM73Q86UV7 250 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 ZNF740Q8NDX6 193 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 OR2T11Q8NH01 316 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 HUS1BQ8NHY5 278 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 BAHD1Q8TBE0 780 aaPredicted RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 TUBGCP3Q96CW5 907 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 THAP11Q96EK4 314 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 ZDHHC12Q96GR4 267 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 AHCYL2Q96HN2 611 aaKnown RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 PPP1R36Q96LQ0 422 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 AKTIPQ9H8T0 292 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 PLSCR2Q9NRY7 297 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 C1GALT1Q9NS00 363 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 FARSBQ9NSD9 589 aaKnown RBP12.52□□□□□ -0.41
CPNE3-205ENST00000522240 SEMA4GQ9NTN9 838 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 RALGAPA1Q6GYQ0 2036 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 HEATR5BQ9P2D3 2071 aa12.52□□□□□ -0.41
CPNE3-205ENST00000522240 CHD8Q9HCK8 2581 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ATP6AP2A0A1C7CYW4 349 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ANKDD1BA6NHY2 528 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 MAGEB17A8MXT2 336 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 CDX4O14627 284 aaPredicted RBP12.51□□□□□ -0.41
CPNE3-205ENST00000522240 CCDC22O60826 627 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 CLEC3AO75596 197 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ATP6AP2O75787 350 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 C9P02748 559 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 SERPINA6P08185 405 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ACPPP15309 386 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 CDH3P22223 829 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ALDH4A1P30038 563 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 LSSP48449 732 aa12.51□□□□□ -0.41
CPNE3-205ENST00000522240 ATP4BP51164 291 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms