RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MVB12AQ96EY5 273 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 NT5DC2Q9H857 520 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 RRAGDQ9NQL2 400 aaPredicted RBP13.62□□□□□ -0.23
NUP54-216ENST00000514901 STARD5Q9NSY2 213 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 TMEM216Q9P0N5 145 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 CROTQ9UKG9 612 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 GRID1Q9ULK0 1009 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 CDC14AQ9UNH5 594 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 ANGPTL3Q9Y5C1 460 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 LAMA5O15230 3695 aa13.62□□□□□ -0.23
NUP54-216ENST00000514901 LOC101059948A0A1B0GTJ6 334 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 A0A1B0GX78 115 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 FEZF1A0PJY2 475 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 C9J4A7 227 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 LCMT2O60294 686 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 KATNA1O75449 491 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 ONECUT2O95948 504 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 RECKO95980 971 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 RAB40ALP0C0E4 278 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 LIFP15018 202 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 KRT4P19013 534 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 ITPKBP27987 946 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 DLSTP36957 453 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 BCL6P41182 706 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 CASP2P42575 452 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 SCTRP47872 440 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 AGTR2P50052 363 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 RPS15P62841 145 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 MC1RQ01726 317 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 SLC18A2Q05940 514 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PWP1Q13610 501 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 FAM53BQ14153 422 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 HIST2H2ACQ16777 129 aaPredicted RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 FBXO48Q5FWF7 155 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PAGE2BQ5JRK9 111 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 ZNF385CQ66K41 422 aaPredicted RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 HIST2H2AA3Q6FI13 130 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PRMT9Q6P2P2 845 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 CCDC81Q6ZN84 652 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 TTLL10Q6ZVT0 673 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 ASPGQ86U10 573 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 TMEM151AQ8N4L1 468 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PTGR2Q8N8N7 351 aaPredicted RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 TRPV3Q8NET8 790 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 HNRNPLLQ8WVV9 542 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 SLC13A3Q8WWT9 602 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 UBE2E3Q969T4 207 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 WDR34Q96EX3 536 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PTCD3Q96EY7 689 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 SLC45A3Q96JT2 553 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 GBP5Q96PP8 586 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 EFCAB11Q9BUY7 163 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 CHST8Q9H2A9 424 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 GEMIN8Q9NWZ8 242 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 COPG2Q9UBF2 871 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 DHCR7Q9UBM7 475 aaKnown RBP13.61□□□□□ -0.23
NUP54-216ENST00000514901 NDOR1Q9UHB4 597 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 ZFP69BQ9UJL9 534 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 PCDHGA6Q9Y5G7 932 aa13.61□□□□□ -0.23
NUP54-216ENST00000514901 TK2O00142 265 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 COPEO14579 308 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 TERTO14746 1132 aaKnown RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 SLC35G6P0C7Q6 338 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 ATP5F1P24539 256 aaPredicted RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 VARSP26640 1264 aaKnown RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 NFKB2Q00653 900 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 MEF2AQ02078 507 aaPredicted RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 IRF8Q02556 426 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 RGS1Q08116 209 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 VAC14Q08AM6 782 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 CHIT1Q13231 466 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 DNASE1L3Q13609 305 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 E2F2Q14209 437 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 RBBP5Q15291 538 aaKnown RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 CCDC153Q494R4 210 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 NKAIN1Q4KMZ8 207 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 XKR6Q5GH73 641 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 TMIGD1Q6UXZ0 262 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 VN1R4Q7Z5H5 301 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 VASH2Q86V25 355 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 TRABD2AQ86V40 505 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 SLC22A9Q8IVM8 553 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 TEX9Q8N6V9 391 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 CT55Q8WUE5 264 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 CCDC126Q96EE4 140 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 PHF21BQ96EK2 531 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 RNF31Q96EP0 1072 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 SENP1Q9P0U3 644 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 GPN3Q9UHW5 284 aaPredicted RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 RUVBL1Q9Y265 456 aaKnown RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 FARSAQ9Y285 508 aaKnown RBP13.6□□□□□ -0.23
NUP54-216ENST00000514901 ASB1Q9Y576 335 aa13.6□□□□□ -0.23
NUP54-216ENST00000514901 URADA6NGE7 173 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 ZNF891A8MT65 544 aaPredicted RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 K7ENP7 123 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 PRPF4O43172 522 aaKnown RBP eCLIP13.59□□□□□ -0.23
NUP54-216ENST00000514901 EFSO43281 561 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 CTIFO43310 598 aaKnown RBP13.59□□□□□ -0.23
NUP54-216ENST00000514901 UGDHO60701 494 aa13.59□□□□□ -0.23
NUP54-216ENST00000514901 WFS1O76024 890 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms