RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 OR2M4Q96R27 311 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 KCNH6Q9H252 994 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 TBC1D17Q9HA65 648 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 GALPQ9UBC7 116 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 CA14Q9ULX7 337 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 DAPL1A0PJW8 107 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 CLIC1O00299 241 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 AHSGP02765 367 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF20P17024 532 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 SLC6A9P48067 706 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 STC1P52823 247 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 LMAN2Q12907 356 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 TMEM214Q6NUQ4 689 aaKnown RBP12.77□□□□□ -0.37
PTPRF-215ENST00000496447 SMARCD2Q92925 531 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 TCF7L1Q9HCS4 588 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 HRASLS2Q9NWW9 162 aa12.77□□□□□ -0.37
PTPRF-215ENST00000496447 MANBAO00462 879 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 PAK4O96013 591 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 MAGP20916 626 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 SHMT2P34897 504 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 GNG2P59768 71 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 LSAMPQ13449 338 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF783Q6ZMS7 281 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 C14orf80Q86SX3 495 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ZC3HC1Q86WB0 502 aaKnown RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 STX12Q86Y82 276 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 RAB7BQ96AH8 199 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 DIRAS2Q96HU8 199 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 C1orf74Q96LT6 269 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 IFT46Q9NQC8 304 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 NLE1Q9NVX2 485 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ACSL5Q9ULC5 683 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 DUOX1Q9NRD9 1551 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ARPC4-TTLL3A0A0A6YYG9 625 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 SOCS5O75159 536 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 GABBR2O75899 941 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 BCHEP06276 602 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ITGA3P26006 1051 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 GMFBP60983 142 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 CRB2Q5IJ48 1285 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 MAMDC4Q6UXC1 1216 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 OR4F6Q8NGB9 312 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 NKD1Q969G9 470 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 HAVCR1Q96D42 359 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ZDHHC12Q96GR4 267 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 NECTIN4Q96NY8 510 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 GPR174Q9BXC1 333 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 DNAJB9Q9UBS3 223 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 SPIN1Q9Y657 262 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 STYXL1Q9Y6J8 313 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 PGLSO95336 258 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 GDF5P43026 501 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 KLHL22Q53GT1 634 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 COLEC12Q5KU26 742 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 AMIGO1Q86WK6 493 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 SMG8Q8ND04 991 aaKnown RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 PROKR2Q8NFJ6 384 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 PSKH2Q96QS6 385 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 PHF12Q96QT6 1004 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 CHCHD6Q9BRQ6 235 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 YTHDF1Q9BYJ9 559 aaKnown RBP12.76□□□□□ -0.37
PTPRF-215ENST00000496447 DERL2Q9GZP9 239 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 AKTIPQ9H8T0 292 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 ATPIF1Q9UII2 106 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 DKKL1Q9UK85 242 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 POMPQ9Y244 141 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 FAM159BA6NKW6 160 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 FBP2O00757 339 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 LDB2O43679 373 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 FAM182AQ5T1J6 154 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 SUSD1Q6UWL2 747 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 OR5K1Q8NHB7 308 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 MNTQ99583 582 aa12.76□□□□□ -0.37
PTPRF-215ENST00000496447 CXorf49A8MYA2 514 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 NPIPA5E9PKD4 350 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 SLC22A1O15245 554 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ONECUT3O60422 494 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 GATBO75879 557 aaKnown RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 C8orf89P0DMQ9 161 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ZNF3P17036 446 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 SLC9A3P48764 834 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ALG1LQ6GMV1 187 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 PDSS2Q86YH6 399 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 WDR92Q96MX6 357 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 NPIPA1Q9UND3 350 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 A0A0G2JPF8 293 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 C2orf74A8MZ97 194 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 HNRNPCL3B7ZW38 293 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 NOBOXO60393 691 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 HNRNPCL4P0DMR1 293 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CDH1P12830 882 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 GRIA2P42262 883 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 RPS13P62277 151 aaKnown RBP12.75□□□□□ -0.37
PTPRF-215ENST00000496447 CD47Q08722 323 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 OLIG2Q13516 323 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 SLC35G1Q2M3R5 365 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 GPR153Q6NV75 609 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ADGRD2Q7Z7M1 963 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 SYVN1Q86TM6 617 aa12.75□□□□□ -0.37
PTPRF-215ENST00000496447 ZSCAN1Q8NBB4 408 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms