RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TAS2R41P59536 307 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RUNX3Q13761 415 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 AHSA2Q719I0 299 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 FAM20CQ8IXL6 584 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 ANKFN1Q8N957 763 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 TMEM145Q8NBT3 493 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 CHST14Q8NCH0 376 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 GLYATL1Q969I3 302 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 BOCQ9BWV1 1114 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SPRTNQ9H040 489 aaPredicted RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 OR51B5Q9H339 312 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 MTG2Q9H4K7 406 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 ANKHQ9HCJ1 492 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SPATA2Q9UM82 520 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 PCDHGB3Q9Y5G1 929 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RREB1Q92766 1687 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 EFCAB9A8MZ26 197 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SLC25A12O75746 678 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 KLK1P06870 262 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 NT5EP21589 574 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 HOXD12P35452 270 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 CCR8P51685 355 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 CLCN4P51793 760 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 PTPN5P54829 565 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 COX10Q12887 443 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 ZNF852Q6ZMS4 543 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 UBR3Q6ZT12 1888 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 OR52L1Q8NGH7 329 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RNFT2Q96EX2 444 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RBM18Q96H35 190 aaKnown RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SLC2A11Q9BYW1 496 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 ANKRD60Q9BZ19 345 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 CCM2LQ9NUG4 571 aaPredicted RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 WBP4O75554 376 aaKnown RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 UGT2B17O75795 530 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 STATHP02808 62 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SRCP12931 536 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 EPCAMP16422 314 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 HLCSP50747 726 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 CDH12P55289 794 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 TXNL4AP83876 142 aaKnown RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 MVKQ03426 396 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 MTAPQ13126 283 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RTN4RL1Q86UN2 441 aaPredicted RBP10.69□□□□□ -0.7
HDAC6-228ENST00000486227 KCNN1Q92952 543 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 TMIGD2Q96BF3 282 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SMIM14Q96QK8 99 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 RTP3Q9BQQ7 232 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 MAT2BQ9NZL9 334 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SUSD2Q9UGT4 822 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 PIAS3Q9Y6X2 628 aa10.69□□□□□ -0.7
HDAC6-228ENST00000486227 SHANK3Q9BYB0 1731 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 CHURC1-FNTBB4DL54 471 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 H0YAE9 185 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 FOXD2O60548 495 aaPredicted RBP10.68□□□□□ -0.7
HDAC6-228ENST00000486227 DNAJB5O75953 348 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 BMP7P18075 431 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 IST1P53990 364 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 CSNK2BP67870 215 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 FAM26DQ5JW98 314 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 NEK5Q6P3R8 708 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PTCHD4Q6ZW05 846 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 MAPK15Q8TD08 544 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SMPDL3AQ92484 453 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 NT5C3BQ969T7 300 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SLC39A13Q96H72 371 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 Q96MT0 163 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 KLF16Q9BXK1 252 aaPredicted RBP10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SERHL2Q9H4I8 314 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SERHLQ9NQF3 203 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ZNF282Q9UDV7 671 aaPredicted RBP10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PLAGL1Q9UM63 463 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 GRID2O43424 1007 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 NOBOXO60393 691 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PRKD3O94806 890 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 CLIC3O95833 236 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ENGP17813 658 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ITPKBP27987 946 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ALDH3A2P51648 485 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 OR2B6P58173 313 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 MED22Q15528 200 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PYDC2Q56P42 97 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PLEKHS1Q5SXH7 462 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ERN2Q76MJ5 926 aaKnown RBP10.68□□□□□ -0.7
HDAC6-228ENST00000486227 OR52B6Q8NGF0 335 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 OR5K1Q8NHB7 308 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SLC38A2Q96QD8 506 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SP140LQ9H930 580 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ABI3Q9P2A4 366 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ING4Q9UNL4 249 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 ST14Q9Y5Y6 855 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 CDK5RAP2Q96SN8 1893 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 TP73O15350 636 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 PDPK1O15530 556 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 KRT33AO76009 404 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 AP2A2O94973 939 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 RGRP47804 291 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 SCN1BQ07699 218 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 MGAT3Q09327 533 aa10.68□□□□□ -0.7
HDAC6-228ENST00000486227 NFATC3Q12968 1075 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms