RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TRIM43BA6NCK2 446 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 C6orf47O95873 294 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ITGBL1O95965 494 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TIA1P31483 386 aaKnown RBP eCLIP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KDELR2P33947 212 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 BNIP3Q12983 259 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 LARS2Q15031 903 aaKnown RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TICAM1Q8IUC6 712 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ADGRG2Q8IZP9 1017 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 PELI3Q8N2H9 469 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 CHST14Q8NCH0 376 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 BTN2A2Q8WVV5 523 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ISG20Q96AZ6 181 aaKnown RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TUBA1CQ9BQE3 449 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 CHCHD6Q9BRQ6 235 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SERHL2Q9H4I8 314 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SERHLQ9NQF3 203 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 STMN3Q9NZ72 180 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KLHL42Q9P2K6 505 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 GBAP04062 536 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 C1GALT1C1LP0DN25 315 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 CD247P20963 164 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ALDH4A1P30038 563 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 HLCSP50747 726 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 PON2Q15165 354 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SUSD1Q6UWL2 747 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TMCO2Q7Z6W1 182 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 AP3S1Q92572 193 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KLK6Q92876 244 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 RAD9AQ99638 391 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SLC28A3Q9HAS3 691 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 NEUROD4Q9HD90 331 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 C11orf16Q9NQ32 467 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KLHL1Q9NR64 748 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SAGE2PA6NJ88 616 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 SLC31A1O15431 190 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 CD36P16671 472 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 TXNL4AP83876 142 aaKnown RBP14.15□□□□□ -0.14
HDAC6-220ENST00000477528 DTWD1Q8N5C7 304 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 NTMT1Q9BV86 223 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 PALMDQ9NP74 551 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 DLGAP4Q9Y2H0 992 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 COQ6Q9Y2Z9 468 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF195O14628 629 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 VIPP01282 170 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 RPLP0P05388 317 aaKnown RBP14.15□□□□□ -0.14
HDAC6-220ENST00000477528 MMP2P08253 660 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 CDKL1Q00532 357 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF33BQ06732 778 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 LSAMPQ13449 338 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 IQCCQ4KMZ1 466 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 C6orf141Q5SZD1 244 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 NRSN1Q8IZ57 195 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 OR4K1Q8NGD4 311 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 SPATA9Q9BWV2 254 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 AMBNQ9NP70 447 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 AGPAT4Q9NRZ5 378 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 PCDHB11Q9Y5F2 797 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 KLKB1P03952 638 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 CCDC159P0C7I6 412 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 NCBP2P52298 156 aaKnown RBP eCLIP14.15□□□□□ -0.14
HDAC6-220ENST00000477528 SEC13P55735 322 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 MTAPQ13126 283 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 SAMD14Q8IZD0 417 aaPredicted RBP14.15□□□□□ -0.14
HDAC6-220ENST00000477528 SLC9A6Q92581 669 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 FBXL8Q96CD0 374 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 POLR2J3Q9H1A7 115 aaKnown RBP14.15□□□□□ -0.14
HDAC6-220ENST00000477528 TMEM98Q9Y2Y6 226 aa14.15□□□□□ -0.14
HDAC6-220ENST00000477528 A0A1W2PPW3 197 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 EFCAB9A8MZ26 197 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 KMOO15229 486 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 GPR39O43194 453 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 FEN1P39748 380 aaKnown RBP14.15□□□□□ -0.15
HDAC6-220ENST00000477528 RAB39AQ14964 217 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 LAPTM4AQ15012 233 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 HLA-DQA1Q5Y7H0 255 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 ENPP6Q6UWR7 440 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 GPR65Q8IYL9 337 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 C9orf43Q8TAL5 461 aaPredicted RBP14.15□□□□□ -0.15
HDAC6-220ENST00000477528 COL21A1Q96P44 957 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 P2RX2Q9UBL9 471 aa14.15□□□□□ -0.15
HDAC6-220ENST00000477528 TRBV23OR9-2A0A075B6M9 112 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 A0A0G2JN53 185 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 UBFD1O14562 309 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 STX11O75558 287 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 MAT2AP31153 395 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 SLC7A9P82251 487 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 TIGD6Q17RP2 521 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 CEACAM20Q6UY09 585 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 LUZP2Q86TE4 346 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 RETREG3Q86VR2 466 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 SORCS1Q8WY21 1168 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 FARSBQ9NSD9 589 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 PTGFRNQ9P2B2 879 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 NDOR1Q9UHB4 597 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 CFAP20Q9Y6A4 193 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 ATAD5Q96QE3 1844 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 E2F3O00716 465 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 IL12AP29459 219 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 GRIA2P42262 883 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms