RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NAPGQ99747 312 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-209ENST00000474432 ILKAPQ9H0C8 392 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-209ENST00000474432 PCBD2Q9H0N5 130 aa17.6■□□□□ 0.41
COL7A1-209ENST00000474432 MOCS1Q9NZB8 636 aa17.6■□□□□ 0.41
COL7A1-209ENST00000474432 NOVA2Q9UNW9 492 aaKnown RBP17.6■□□□□ 0.41
COL7A1-209ENST00000474432 PRPF4O43172 522 aaKnown RBP eCLIP17.59■□□□□ 0.41
COL7A1-209ENST00000474432 BMP10O95393 424 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 CELA2AP08217 269 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 GP1BBP13224 206 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 SOX11P35716 441 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 IL2P60568 153 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 PCOLCEQ15113 449 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 NR6A1Q15406 480 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 FHL5Q5TD97 284 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 FAAH2Q6GMR7 532 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 SBSNQ6UWP8 590 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 ANKMY2Q8IV38 441 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 GPATCH11Q8N954 259 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 KCT2Q8NC54 265 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 ABHD11Q8NFV4 315 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 OR4K1Q8NGD4 311 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 GABPB2Q8TAK5 448 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-209ENST00000474432 PYCR2Q96C36 320 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 THAP11Q96EK4 314 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 PDLIM5Q96HC4 596 aaKnown RBP17.59■□□□□ 0.41
COL7A1-209ENST00000474432 RUNDC3BQ96NL0 473 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 MCMBPQ9BTE3 642 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 YIPF2Q9BWQ6 316 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 PPANQ9NQ55 473 aaKnown RBP17.59■□□□□ 0.41
COL7A1-209ENST00000474432 CORO1CQ9ULV4 474 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-209ENST00000474432 DOPEY1Q5JWR5 2465 aa17.59■□□□□ 0.41
COL7A1-209ENST00000474432 H0YIG0 161 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 CCDC188H7C350 402 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 NSA2O95478 260 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 ANXA5P08758 320 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 PRR35P0CG20 571 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 CDH1P12830 882 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 RPL21P46778 160 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 GLRBP48167 497 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 MRPS25P82663 173 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 EEF1A2Q05639 463 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 MFAP5Q13361 173 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 PDAP1Q13442 181 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 PPP1R3AQ16821 1122 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 FAM45BPQ6NSW5 357 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 ISLR2Q6UXK2 745 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 LINC00696Q6ZRV3 163 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 SLC26A11Q86WA9 606 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 C17orf64Q86WR6 236 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 PDSS2Q86YH6 399 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 CATSPER1Q8NEC5 780 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 DNAJB14Q8TBM8 379 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 FAM45AQ8TCE6 357 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 FBXL8Q96CD0 374 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 SNF8Q96H20 258 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 VPS50Q96JG6 964 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 IMMP1LQ96LU5 166 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 LMF1Q96S06 567 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 SARGQ9BW04 601 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 SLC29A3Q9BZD2 475 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 TRIM31Q9BZY9 425 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF700Q9H0M5 742 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 MAP10Q9P2G4 905 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 COPG1Q9Y678 874 aaKnown RBP17.58■□□□□ 0.4
COL7A1-209ENST00000474432 SCN2AQ99250 2005 aa17.58■□□□□ 0.4
COL7A1-209ENST00000474432 NBPF19A0A087WUL8 3843 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 NSG1A0A0A6YYJ2 146 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 OR2W5A6NFC9 320 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 AGFG2O95081 481 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 SERPINA7P05543 415 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 HEXBP07686 556 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 IL1RNP18510 177 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 CCND1P24385 295 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 TSFMP43897 325 aaKnown RBP17.57■□□□□ 0.4
COL7A1-209ENST00000474432 ARL4CP56559 192 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 NDUFA9Q16795 377 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 DUPD1Q68J44 220 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 ZC3HC1Q86WB0 502 aaKnown RBP17.57■□□□□ 0.4
COL7A1-209ENST00000474432 PALM2Q8IXS6 379 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 KBTBD2Q8IY47 623 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 MFSD9Q8NBP5 474 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 FBXO36Q8NEA4 188 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 BRIX1Q8TDN6 353 aaKnown RBP17.57■□□□□ 0.4
COL7A1-209ENST00000474432 ALKBH8Q96BT7 664 aaKnown RBP17.57■□□□□ 0.4
COL7A1-209ENST00000474432 MOCOSQ96EN8 888 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 VN1R1Q9GZP7 353 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 SPNS1Q9H2V7 528 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 SMYD2Q9NRG4 433 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 ARL15Q9NXU5 204 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 MKL2Q9ULH7 1088 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 SNX24Q9Y343 169 aa17.57■□□□□ 0.4
COL7A1-209ENST00000474432 CTAGE15A4D2H0 777 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 SGK494L7N484 410 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 HIST1H2AGP0C0S8 130 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 ZNF37AP17032 561 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-209ENST00000474432 HIST1H2ADP20671 130 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 CXCR2P25025 360 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 AVPR1BP47901 424 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 AP1S2P56377 157 aa17.56■□□□□ 0.4
COL7A1-209ENST00000474432 TAS2R39P59534 338 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms