RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ACTR6Q9GZN1 396 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 MAGIXQ9H6Y5 334 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 FARSBQ9NSD9 589 aaKnown RBP6.02□□□□□ -1.45
VPS13D-202ENST00000460333 EDARQ9UNE0 448 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 PCDHB3Q9Y5E6 796 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 PCDHGB6Q9Y5F9 930 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 J3KR12 359 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 FOXD2O60548 495 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RP2O75695 350 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ATE1O95260 518 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 OR56A5P0C7T3 313 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CASP3P42574 277 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RBM34P42696 430 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 NKX2-5P52952 324 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PLA2G16P53816 162 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RAB5BP61020 215 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 NIPAL4Q0D2K0 466 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GRSF1Q12849 480 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 UBXN2BQ14CS0 331 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 SLC14A2Q15849 920 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ALFQ53S48 1182 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PDE12Q6L8Q7 609 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PGM2L1Q6PCE3 622 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CIR1Q86X95 450 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 UBQLNLQ8IYU4 475 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 KLHL6Q8WZ60 621 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TBATAQ96M53 351 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TMEM45AQ9NWC5 275 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 UCKL1Q9NWZ5 548 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TRPC4Q9UBN4 977 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TBX21Q9UL17 535 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TRIP11Q15643 1979 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ANKDD1BA6NHY2 528 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 AGAP5A6NIR3 686 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 SLC1A7O00341 560 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ENTPD6O75354 484 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CCNDBP1O95273 360 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TRAPPC2P0DI81 140 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TRAPPC2BP0DI82 140 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 SMIM18P0DKX4 95 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CTSAP10619 480 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CD68P34810 354 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 OMPP47874 163 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RAB2AP61019 212 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 WDR5P61964 334 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TSTQ16762 297 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RFTN2Q52LD8 501 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GCNT6Q5T4J0 391 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 FOXB2Q5VYV0 432 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ESRP1Q6NXG1 681 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PGBD2Q6P3X8 592 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 DHRS4L2Q6PKH6 230 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PRSS48Q7RTY5 328 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 KRT77Q7Z794 578 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 OOSP2Q86WS3 158 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TRIM48Q8IWZ4 208 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 SPARTQ8N0X7 666 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TTC9BQ8N6N2 239 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 IGSF8Q969P0 613 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PYURFQ96I23 114 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TCEAL7Q9BRU2 100 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 AKTIPQ9H8T0 292 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 MEAF6Q9HAF1 191 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ZFP14Q9HCL3 533 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 PCDHB16Q9NRJ7 776 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RAD18Q9NS91 495 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TMEM30AQ9NV96 361 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 FAM118AQ9NWS6 357 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 NKIRAS2Q9NYR9 191 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CDH7Q9ULB5 785 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GRM6O15303 877 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 XPNPEP2O43895 674 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 DLX3O60479 287 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ICMTO60725 284 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 IFNW1P05000 195 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GTF2E2P29084 291 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ZNF81P51508 661 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RPS24P62847 133 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CDKL1Q00532 357 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CAMK2GQ13555 558 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TAF1AQ15573 450 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 UBAP2Q5T6F2 1119 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GPR158Q5T848 1215 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 MANEALQ5VSG8 457 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 DESI1Q6ICB0 168 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 FAM220AQ7Z4H9 259 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TOMM5Q8N4H5 51 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CPA6Q8N4T0 437 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 OR8J3Q8NGG0 315 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 BPIFB1Q8TDL5 484 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CCDC107Q8WV48 283 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TNFAIP8L1Q8WVP5 186 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 POF1BQ8WVV4 589 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 ARPC5LQ9BPX5 153 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 CLSTN3Q9BQT9 956 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 RC3H2Q9HBD1 1191 aaKnown RBP6.01□□□□□ -1.45
VPS13D-202ENST00000460333 TMEM181Q9P2C4 612 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 NCDNQ9UBB6 729 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 COMMD3Q9UBI1 195 aa6.01□□□□□ -1.45
VPS13D-202ENST00000460333 GULP1Q9UBP9 304 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms