RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CCL7P80098 99 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 REEP5Q00765 189 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 HMGCS1Q01581 520 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 DDX39BQ13838 428 aaKnown RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 XKR7Q5GH72 579 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 IRGCQ6NXR0 463 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 FIGLAQ6QHK4 219 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 RIPOR1Q6ZS17 1223 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 ASCL5Q7RTU5 278 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 EFL1Q7Z2Z2 1120 aaKnown RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 ALYREFQ86V81 257 aaKnown RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 PAQR7Q86WK9 346 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 RHBDD1Q8TEB9 315 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 USP7Q93009 1102 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 SLC45A3Q96JT2 553 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 TGM7Q96PF1 710 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 MTERF1Q99551 399 aaKnown RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 NUDT22Q9BRQ3 303 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 PCBD2Q9H0N5 130 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 EHD1Q9H4M9 534 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 STN1Q9H668 368 aaKnown RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 MEAF6Q9HAF1 191 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 PELI2Q9HAT8 420 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 KLHL3Q9UH77 587 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 CCDC88CQ9P219 2028 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 SEC16AO15027 2179 aa10.53□□□□□ -0.72
SCN9A-205ENST00000454569 NUP214P35658 2090 aaPredicted RBP10.53□□□□□ -0.72
SCN9A-205ENST00000454569 IGHV5-51A0A0C4DH38 117 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 SLC9B1P1A6NJY1 282 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 MAGEB17A8MXT2 336 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 H0YIV9 168 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 AGRPO00253 132 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 HGSO14964 777 aaPredicted RBP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 TNFSF14O43557 240 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 UGDHO60701 494 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CRCPO75575 148 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 PCNAP12004 261 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CKMT1AP12532 417 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CMPK1P30085 196 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 HNF4AP41235 474 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CCR8P51685 355 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 HK2P52789 917 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 ARFIP2P53365 341 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 EPHA4P54764 986 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 INHBCP55103 352 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CYP4F2P78329 520 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 RBBP5Q15291 538 aaKnown RBP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 SLC5A12Q1EHB4 618 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 LSM12Q3MHD2 195 aaKnown RBP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 FRG2Q64ET8 278 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 FOXR1Q6PIV2 292 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 ADCK2Q7Z695 626 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 DDIASQ8IXT1 998 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 LAS2Q8IYD9 372 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 HUS1BQ8NHY5 278 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 SELENOMQ8WWX9 145 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 MAELQ96JY0 434 aaKnown RBP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 MARK4Q96L34 752 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 TRAPPC9Q96Q05 1148 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 FRG2BQ96QU4 278 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 CCDC3Q9BQI4 270 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 PLCD4Q9BRC7 762 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 ACPTQ9BZG2 426 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 AKTIPQ9H8T0 292 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 TMEM184CQ9NVA4 438 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 PILRAQ9UKJ1 303 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 G3BP2Q9UN86 482 aaKnown RBP10.52□□□□□ -0.72
SCN9A-205ENST00000454569 PCDHGB2Q9Y5G2 931 aa10.52□□□□□ -0.72
SCN9A-205ENST00000454569 GVINP1Q7Z2Y8 2422 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 LOC105369274A0A096LPK9 316 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 LOC102723532A0A0G2JNH3 316 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 A0A0J9YY10 115 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 OR2A25A4D2G3 310 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 A8MU76 341 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 C4orf51C9J302 202 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 GIPC1O14908 333 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 OR1F1O43749 312 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 CBFA2T3O75081 653 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 PEX11AO75192 247 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 ULK1O75385 1050 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 SNUPNO95149 360 aaKnown RBP10.52□□□□□ -0.73
SCN9A-205ENST00000454569 GPR3P46089 330 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 RPS13P62277 151 aaKnown RBP10.52□□□□□ -0.73
SCN9A-205ENST00000454569 ABATP80404 500 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 DAB2P98082 770 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 CYP4F3Q08477 520 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 FRMPD2BQ6IN97 320 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 MED27Q6P2C8 311 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 TMIGD1Q6UXZ0 262 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 LARP4Q71RC2 724 aaKnown RBP eCLIP10.52□□□□□ -0.73
SCN9A-205ENST00000454569 OR4N4Q8N0Y3 316 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 AVL9Q8NBF6 648 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 IFI44Q8TCB0 444 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 NUDT8Q8WV74 236 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 C19orf60Q96EN9 201 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 CNDP2Q96KP4 475 aaKnown RBP10.52□□□□□ -0.73
SCN9A-205ENST00000454569 EFCAB11Q9BUY7 163 aa10.52□□□□□ -0.73
SCN9A-205ENST00000454569 SLC29A3Q9BZD2 475 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms