RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OR51Q1Q8NH59 317 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 GABPB2Q8TAK5 448 aaPredicted RBP12.57□□□□□ -0.4
HMGB3-204ENST00000448905 M1APQ8TC57 530 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 CALML6Q8TD86 181 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 THAP3Q8WTV1 239 aaPredicted RBP12.57□□□□□ -0.4
HMGB3-204ENST00000448905 KCNJ9Q92806 393 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 MAGED4Q96JG8 741 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 VN1R1Q9GZP7 353 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 RBSNQ9H1K0 784 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 GPAMQ9HCL2 828 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 GALPQ9UBC7 116 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 SH3BGRL2Q9UJC5 107 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 DHRS7Q9Y394 339 aa12.57□□□□□ -0.4
HMGB3-204ENST00000448905 SEC16AO15027 2179 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 FAM237BA0A1B0GVD1 139 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 FAM227AF5H4B4 570 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 CELA2AP08217 269 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 HIST1H2AGP0C0S8 130 aaPredicted RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 HIST1H2ADP20671 130 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 CCND1P24385 295 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 SKIV2L2P42285 1042 aaKnown RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 XCR1P46094 333 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 KCNJ1P48048 391 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 TAS2R50P59544 299 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 SKP1P63208 163 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 ALDH6A1Q02252 535 aaKnown RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 OC90Q02509 493 aaPredicted RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 KCNJ11Q14654 390 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 NSDHLQ15738 373 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 ZNF470Q6ECI4 717 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 H3F3CQ6NXT2 135 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 UBE2R2Q712K3 238 aaPredicted RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 PLD3Q8IV08 490 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 EID3Q8N140 333 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 ARHGEF39Q8N4T4 335 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 TBC1D19Q8N5T2 526 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 SLC5A8Q8N695 610 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 TMEM178AQ8NBL3 297 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 HIST1H2AHQ96KK5 128 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 CCDC138Q96M89 665 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 HIST1H2AJQ99878 128 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 H2AFJQ9BTM1 129 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 CCDC177Q9NQR7 707 aaPredicted RBP12.56□□□□□ -0.4
HMGB3-204ENST00000448905 CENPEQ02224 2701 aa12.56□□□□□ -0.4
HMGB3-204ENST00000448905 LRBAP50851 2863 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 PABPN1LA6NDY0 278 aaKnown RBP12.55□□□□□ -0.4
HMGB3-204ENST00000448905 EIF3FO00303 357 aaPredicted RBP12.55□□□□□ -0.4
HMGB3-204ENST00000448905 AVILO75366 819 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 MLNP12872 115 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 POU3F2P20265 443 aaPredicted RBP12.55□□□□□ -0.4
HMGB3-204ENST00000448905 GRNP28799 593 aaKnown RBP12.55□□□□□ -0.4
HMGB3-204ENST00000448905 CD96P40200 585 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 TERF1P54274 439 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 GPS1Q13098 491 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 NIPAL1Q6NVV3 410 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 CYHR1Q6ZMK1 362 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 ANKRD37Q7Z713 158 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 PCGF5Q86SE9 256 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 C17orf64Q86WR6 236 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 SPPL2CQ8IUH8 684 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 BEST3Q8N1M1 668 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 SPC24Q8NBT2 197 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 SLC13A3Q8WWT9 602 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 LPAR4Q99677 370 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 XAB2Q9HCS7 855 aaKnown RBP12.55□□□□□ -0.4
HMGB3-204ENST00000448905 MMP25Q9NPA2 562 aa12.55□□□□□ -0.4
HMGB3-204ENST00000448905 IGHV3-20A0A0C4DH32 117 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SGK494L7N484 410 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 CEP104O60308 925 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SNRPB2P08579 225 aaKnown RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SLC35G6P0C7Q6 338 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SSTR2P30874 369 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 RGS4P49798 205 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 MEF2AQ02078 507 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 CTBP1Q13363 440 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 CUL1Q13616 776 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 TUBA3CQ13748 450 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 HERC3Q15034 1050 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SIX1Q15475 284 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 OR1C1Q15619 314 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 TRIP13Q15645 432 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 CAPN13Q6MZZ7 669 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 TMEM214Q6NUQ4 689 aaKnown RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 TUBA3EQ6PEY2 450 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 ASPGQ86U10 573 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 LRRC56Q8IYG6 542 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 PLPP5Q8NEB5 264 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 GPR137Q96N19 417 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 OR1F2PQ96R84 312 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 KLHL1Q9NR64 748 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 FBXO6Q9NRD1 293 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 C20orf96Q9NUD7 363 aaPredicted RBP12.54□□□□□ -0.4
HMGB3-204ENST00000448905 HCN3Q9P1Z3 774 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 SLC22A7Q9Y694 548 aa12.54□□□□□ -0.4
HMGB3-204ENST00000448905 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.53□□□□□ -0.4
HMGB3-204ENST00000448905 TCRBV7S3A2A0A539 114 aa12.53□□□□□ -0.4
HMGB3-204ENST00000448905 MAGEB17A8MXT2 336 aa12.53□□□□□ -0.4
HMGB3-204ENST00000448905 NPIPA5E9PKD4 350 aa12.53□□□□□ -0.4
HMGB3-204ENST00000448905 NDC80O14777 642 aa12.53□□□□□ -0.4
HMGB3-204ENST00000448905 P2RX6O15547 441 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms