RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TBATAQ96M53 351 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PPM1MQ96MI6 270 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZDHHC18Q9NUE0 388 aa7□□□□□ -1.29
VPS53-204ENST00000437048 IKZF2Q9UKS7 526 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ABCC6O95255 1503 aa7□□□□□ -1.29
VPS53-204ENST00000437048 E5RJQ4 531 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HCRTR2O43614 444 aa7□□□□□ -1.29
VPS53-204ENST00000437048 RPS3P23396 243 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-204ENST00000437048 GTF2A2P52657 109 aa7□□□□□ -1.29
VPS53-204ENST00000437048 KCNIP4Q6PIL6 250 aa7□□□□□ -1.29
VPS53-204ENST00000437048 TPRA1Q86W33 373 aa7□□□□□ -1.29
VPS53-204ENST00000437048 FAM109AQ8N4B1 249 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR10G2Q8NGC3 310 aa7□□□□□ -1.29
VPS53-204ENST00000437048 IL31RAQ8NI17 732 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DNAJC19Q96DA6 116 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PYURFQ96I23 114 aa7□□□□□ -1.29
VPS53-204ENST00000437048 BMFQ96LC9 184 aa7□□□□□ -1.29
VPS53-204ENST00000437048 NKIRAS2Q9NYR9 191 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ERVK-19Q9WJR5 959 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DCDC2CA8MYV0 355 aa7□□□□□ -1.29
VPS53-204ENST00000437048 K7EPI3 171 aa7□□□□□ -1.29
VPS53-204ENST00000437048 MATN3O15232 486 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CYP4B1P13584 511 aa7□□□□□ -1.29
VPS53-204ENST00000437048 RELAQ04206 551 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HSDL1Q3SXM5 330 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LPCAT4Q643R3 524 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PXKQ7Z7A4 578 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR13J1Q8NGT2 312 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF486Q96H40 463 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 IDI2Q9BXS1 227 aa7□□□□□ -1.29
VPS53-204ENST00000437048 TCEAL2Q9H3H9 227 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 PRDM12Q9H4Q4 367 aa7□□□□□ -1.29
VPS53-204ENST00000437048 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-204ENST00000437048 PRSS51A0A1B0GVH4 220 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HTRA2O43464 458 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 EFNA1P20827 205 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 RPL6Q02878 288 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 HS3ST5Q8IZT8 346 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LGI2Q8N0V4 545 aa7□□□□□ -1.29
VPS53-204ENST00000437048 KIF13AQ9H1H9 1805 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SCN8AQ9UQD0 1980 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CLTCQ00610 1675 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 YKT6O15498 198 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ALDH2P05091 517 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HSD11B2P80365 405 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HSPA14Q0VDF9 509 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PTPRRQ15256 657 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DPYSL2Q16555 572 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CCSAPQ6IQ19 270 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 ZSCAN1Q8NBB4 408 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SEMA6DQ8NFY4 1073 aa7□□□□□ -1.29
VPS53-204ENST00000437048 NEK7Q8TDX7 302 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ABHD16BQ9H3Z7 469 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZFP14Q9HCL3 533 aa7□□□□□ -1.29
VPS53-204ENST00000437048 STARD7Q9NQZ5 370 aa7□□□□□ -1.29
VPS53-204ENST00000437048 AGO1Q9UL18 857 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF20P17024 532 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PRKCHP24723 683 aa7□□□□□ -1.29
VPS53-204ENST00000437048 RPA4Q13156 261 aa7□□□□□ -1.29
VPS53-204ENST00000437048 MFSD13AQ14CX5 517 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HECTD2Q5U5R9 776 aa7□□□□□ -1.29
VPS53-204ENST00000437048 FSTL4Q6MZW2 842 aa7□□□□□ -1.29
VPS53-204ENST00000437048 TMEM205Q6UW68 189 aa7□□□□□ -1.29
VPS53-204ENST00000437048 IFNL1Q8IU54 200 aa7□□□□□ -1.29
VPS53-204ENST00000437048 GPR65Q8IYL9 337 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CXorf40AQ8TE69 158 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CNPPD1Q9BV87 410 aa7□□□□□ -1.29
VPS53-204ENST00000437048 KLHL9Q9P2J3 617 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PPATQ06203 517 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CCINQ13939 588 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SIM2Q14190 667 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 HIST2H3PS2Q5TEC6 136 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PRAMEF13Q5VWM6 474 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZDHHC14Q8IZN3 488 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LGI4Q8N135 537 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PIAS4Q8N2W9 510 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 OR2T11Q8NH01 316 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ADAMTS18Q8TE60 1221 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CPT1BQ92523 772 aa7□□□□□ -1.29
VPS53-204ENST00000437048 MFSD1Q9H3U5 465 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ENY2Q9NPA8 101 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ACOT7O00154 380 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PRKACBP22694 351 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 DGKQP52824 942 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZNF550Q7Z398 422 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TRIB2Q92519 343 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 PLD4Q96BZ4 506 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZFP3Q96NJ6 502 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ZNF382Q96SR6 550 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 SEC22CQ9BRL7 303 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 TAPBPLQ9BX59 468 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 COPS7AQ9UBW8 275 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 ARID1AO14497 2285 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 F5H0A9 414 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 KLRC4O43908 158 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 MLLT3P42568 568 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 FGL2Q14314 439 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 GK2Q14410 553 aaPredicted RBP6.99□□□□□ -1.29
VPS53-204ENST00000437048 FAM174BQ3ZCQ3 159 aa6.99□□□□□ -1.29
VPS53-204ENST00000437048 AKIRIN2Q53H80 203 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms