RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PPP1R8Q12972 351 aaKnown RBP14.97□□□□□ -0.01
PTPRF-206ENST00000429895 KHDC1Q4VXA5 237 aaKnown RBP14.97□□□□□ -0.01
PTPRF-206ENST00000429895 TRIM74Q86UV6 250 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 DENND6BQ8NEG7 585 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 OR5T2Q8NGG2 359 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 BORCS8Q96FH0 119 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 PSKH2Q96QS6 385 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 NPLQ9BXD5 320 aaPredicted RBP14.97□□□□□ -0.01
PTPRF-206ENST00000429895 OR8D2Q9GZM6 311 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 GRHPRQ9UBQ7 328 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 FARSAQ9Y285 508 aaKnown RBP14.97□□□□□ -0.01
PTPRF-206ENST00000429895 E2F3O00716 465 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 CD36P16671 472 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 MAGEA12P43365 314 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 ARHGAP1Q07960 439 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 IQCKQ8N0W5 287 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 THUMPD1Q9NXG2 353 aaKnown RBP14.97□□□□□ -0.01
PTPRF-206ENST00000429895 LGALS13Q9UHV8 139 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 PCDHB3Q9Y5E6 796 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 PCDHGB1Q9Y5G3 927 aa14.97□□□□□ -0.01
PTPRF-206ENST00000429895 ATRNO75882 1429 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 TMEM63AO94886 807 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 AGR2O95994 175 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 C1orf189Q5VU69 101 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 SMPDL3AQ92484 453 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 ERMAPQ96PL5 475 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 KCNH6Q9H252 994 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 FAM124BQ9H5Z6 455 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 ENY2Q9NPA8 101 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 WRAP73Q9P2S5 460 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 KCTD3Q9Y597 815 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 TCRBV21S2A2A0A5A6 115 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 VNN2O95498 520 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 IL1R2P27930 398 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 SLC11A1P49279 550 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 MEF2AQ02078 507 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 DUOXA1Q1HG43 343 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 WDR45BQ5MNZ6 344 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 GATSQ8NAP1 163 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 MAPK15Q8TD08 544 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 IL21RQ9HBE5 538 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 GALPQ9UBC7 116 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 CDH1P12830 882 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 ANXA8P13928 327 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 PREPP48147 710 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 CLRN1P58418 232 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 ALG10Q5BKT4 473 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 GEMIN6Q8WXD5 167 aaKnown RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 HPF1Q9NWY4 346 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 C19orf25Q9UFG5 118 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-206ENST00000429895 POMPQ9Y244 141 aa14.96□□□□□ -0.01
PTPRF-206ENST00000429895 LEFTY2O00292 366 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 CREB1P16220 341 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 MSX1P28360 303 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 MLLT10P55197 1068 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 DSG2Q14126 1118 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 MAD2L1BPQ15013 274 aaPredicted RBP14.96□□□□□ -0.02
PTPRF-206ENST00000429895 PLCZ1Q86YW0 608 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 CLDN19Q8N6F1 224 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 OR4F6Q8NGB9 312 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 SLC7A6OSQ96CW6 309 aaPredicted RBP14.96□□□□□ -0.02
PTPRF-206ENST00000429895 RIMBP3CA6NJZ7 1639 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 RIMBP3BA6NNM3 1639 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 RIMBP3Q9UFD9 1639 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 A8MT66 165 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 TULP2O00295 520 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 RNF13O43567 381 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 DIRAS1O95057 198 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 SOX14O95416 240 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 KLF8O95600 359 aaPredicted RBP14.96□□□□□ -0.02
PTPRF-206ENST00000429895 NUDT6P53370 316 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 ELOAQ14241 798 aaKnown RBP14.96□□□□□ -0.02
PTPRF-206ENST00000429895 USP29Q9HBJ7 922 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 ERVK-18Q9QC07 812 aa14.96□□□□□ -0.02
PTPRF-206ENST00000429895 SOX1O00570 391 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 VILLO15195 856 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 KDM4BO94953 1096 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 CFHP08603 1231 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 SNX29P2Q8IUI4 249 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 THAP3Q8WTV1 239 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 KIAA1143Q96AT1 154 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 LRRC58Q96CX6 371 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 KCTD7Q96MP8 289 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 SGIP1Q9BQI5 828 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 RHCGQ9UBD6 479 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 PLCL2Q9UPR0 1127 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 IFT52Q9Y366 437 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 NUAK1O60285 661 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 DNAJA1P31689 397 aaKnown RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 BMP8BP34820 402 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 RPS27LQ71UM5 84 aaKnown RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 BMP8AQ7Z5Y6 402 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 INO80EQ8NBZ0 244 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 NPLOC4Q8TAT6 608 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 HSPBAP1Q96EW2 488 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 C13orf42A0A1B0GVH6 325 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 KANTRA0A1W2PQU2 76 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 IFNA21P01568 189 aa14.95□□□□□ -0.02
PTPRF-206ENST00000429895 SLC2A2P11168 524 aaPredicted RBP14.95□□□□□ -0.02
PTPRF-206ENST00000429895 UNGP13051 313 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms