RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 SNX31Q8N9S9 440 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 ASB11Q8WXH4 323 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 ESAMQ96AP7 390 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 SLCO4A1Q96BD0 722 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 NXPE2Q96DL1 559 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 CMTM7Q96FZ5 175 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 CNBD2Q96M20 576 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 VPS35Q96QK1 796 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 TMEM79Q9BSE2 394 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 ELOVL6Q9H5J4 265 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 SGK2Q9HBY8 427 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 PNPLA3Q9NST1 481 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 DNAJC11Q9NVH1 559 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 WSB2Q9NYS7 404 aaPredicted RBP12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 POLR3HQ9Y535 204 aaPredicted RBP12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 PCDHGB2Q9Y5G2 931 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 HECTD1Q9ULT8 2610 aa12.48□□□□□ -0.41
SMARCB1-203ENST00000407082 CABIN1Q9Y6J0 2220 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 MYO18BQ8IUG5 2567 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3DA0A087WVF3 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3IA0A087WXS9 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3EA0A087X179 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3KA0A087X1G2 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 RNF103-CHMP3A0A140T963 221 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 A0A1B0GTL3 188 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3FA6NER0 549 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 LRRC72A6NJI9 287 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 METTL12A8MUP2 240 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3LB9A6J9 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 GFYI3L273 518 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 INPP4BO15327 924 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 PLRG1O43660 514 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TLX3O43711 291 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 PRMT3O60678 531 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 DKK1O94907 266 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 LDLRP01130 860 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 ANXA6P08133 673 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 C1SP09871 688 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3HP0C7X1 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CDH1P12830 882 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 HSD3B1P14060 373 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 ATP6V1B2P21281 511 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 HSD3B2P26439 372 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CALRP27797 417 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CCR7P32248 378 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 ZFP36L2P47974 494 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 ADPRHP54922 357 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 RPL38P63173 70 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CAPRIN1Q14444 709 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 LRRC73Q5JTD7 316 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 PAGE3Q5JUK9 113 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 C10orf62Q5T681 223 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3GQ6DHY5 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 GLYATQ6IB77 296 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3CQ6IPX1 549 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 TBC1D3Q8IZP1 549 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 L3MBTL4Q8NA19 623 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 LSM14AQ8ND56 463 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 DDHD1Q8NEL9 900 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CADM4Q8NFZ8 388 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 OR52E4Q8NGH9 312 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 LKAAEAR1Q8TD35 194 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 SKA2Q8WVK7 121 aaPredicted RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 SLC13A3Q8WWT9 602 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 SELENOMQ8WWX9 145 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 RAB7BQ96AH8 199 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 FAM131CQ96AQ9 280 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 VPS33AQ96AX1 596 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 FBXL8Q96CD0 374 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CCDC115Q96NT0 180 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CDK15Q96Q40 435 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 SLC39A3Q9BRY0 314 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 YTHDF1Q9BYJ9 559 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 ZCCHC2Q9C0B9 1178 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 AGPAT4Q9NRZ5 378 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 PDE10AQ9Y233 779 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 SNX11Q9Y5W9 270 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 CFAP46Q8IYW2 2715 aa12.47□□□□□ -0.41
SMARCB1-203ENST00000407082 NUMA1Q14980 2115 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 CLGNO14967 610 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 DEAF1O75398 565 aaPredicted RBP12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 TIPRLO75663 272 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 MYO1DO94832 1006 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 SCELO95171 688 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 PCDH8O95206 1070 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 SEMA4FO95754 770 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 CATP04040 527 aaKnown RBP12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 PAX7P23759 505 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 GRK6P43250 576 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 HTR6P50406 440 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 NR1H2P55055 460 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 POLE2P56282 527 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 CLDN8P56748 225 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 TAS2R38P59533 333 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 CXADRP78310 365 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 PLOD1Q02809 727 aaPredicted RBP12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 CHRNB3Q05901 458 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 HSPA14Q0VDF9 509 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 EPS8Q12929 822 aa12.46□□□□□ -0.41
SMARCB1-203ENST00000407082 ABRQ12979 859 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms