RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 H0YIG0 161 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 PCDH17O14917 1159 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 NSA2O95478 260 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 ENO2P09104 434 aaPredicted RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 CDH1P12830 882 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 CXCR2P25025 360 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 BCL6P41182 706 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 MAT1AQ00266 395 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 TMEM214Q6NUQ4 689 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 CUZD1Q86UP6 607 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 ZC3HC1Q86WB0 502 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 CISD2Q8N5K1 135 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 CAMKVQ8NCB2 501 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 BBOF1Q8ND07 529 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 ABHD11Q8NFV4 315 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 OR9A4Q8NGU2 314 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 PPP4R1Q8TF05 950 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 FBXL8Q96CD0 374 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 HAUS8Q9BT25 410 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 SLC29A3Q9BZD2 475 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 FAM129AQ9BZQ8 928 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 IKZF3Q9UKT9 509 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 PCDHGA10Q9Y5H3 936 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 NSG1A0A0A6YYJ2 146 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 LCMT2O60294 686 aaKnown RBP20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 HEXBP07686 556 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 SBSNQ6UWP8 590 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 TMEM207Q6UWW9 146 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 STRA8Q7Z7C7 330 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 ASPGQ86U10 573 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 SLC26A11Q86WA9 606 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 KBTBD2Q8IY47 623 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 ATL1Q8WXF7 558 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 PYCR2Q96C36 320 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 MACROD1Q9BQ69 325 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 ASF1BQ9NVP2 202 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 MAP10Q9P2G4 905 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 NOVA2Q9UNW9 492 aaKnown RBP20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 CSAG2Q9Y5P2 127 aa20.57■□□□□ 0.88
CCDC28B-201ENST00000373602 RP1L1Q8IWN7 2480 aaPredicted RBP20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 LOC102723996A0A087X1L8 192 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 BMP10O95393 424 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 ZNF37AP17032 561 aaPredicted RBP20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 GRK3P35626 688 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 MRPS25P82663 173 aaKnown RBP20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 EEF1A2Q05639 463 aaKnown RBP20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 FHL5Q5TD97 284 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 FAAH2Q6GMR7 532 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 TMEM205Q6UW68 189 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 ISLR2Q6UXK2 745 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 PRSS41Q7RTY9 318 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 ZBED8Q8IZ13 594 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 MFSD9Q8NBP5 474 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 OR4K1Q8NGD4 311 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 SLC13A3Q8WWT9 602 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 OR4K3Q96R72 315 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 LMF1Q96S06 567 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 SARGQ9BW04 601 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 EPS8L2Q9H6S3 715 aa20.56■□□□□ 0.88
CCDC28B-201ENST00000373602 IGHV1-45A0A0A0MS14 117 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 FAM95CA0A1B0GW59 222 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 FAM187AA6NFU0 413 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 CYSRT1A8MQ03 144 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 KLHL18O94889 574 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 GUCA1CO95843 209 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 CCR8P51685 355 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 EFNA3P52797 238 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 MFAP5Q13361 173 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 ESPL1Q14674 2120 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 NKAPQ8N5F7 415 aaKnown RBP20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 KCT2Q8NC54 265 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 SPATA4Q8NEY3 305 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 DNAJB14Q8TBM8 379 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 ANKRD7Q92527 254 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 BARD1Q99728 777 aaKnown RBP20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 ERP44Q9BS26 406 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 MCMBPQ9BTE3 642 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 RIC8BQ9NVN3 520 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 NSMCE4AQ9NXX6 385 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 WHRNQ9P202 907 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 MKL2Q9ULH7 1088 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 LRRK2Q5S007 2527 aa20.55■□□□□ 0.88
CCDC28B-201ENST00000373602 SERPINA7P05543 415 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 PRR35P0CG20 571 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 IL1RNP18510 177 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 SAT1P21673 171 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 GLRBP48167 497 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 TAS2R39P59534 338 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 MRPL49Q13405 166 aaKnown RBP20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 PCOLCEQ15113 449 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 PPP1R3AQ16821 1122 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 OR51Q1Q8NH59 317 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 PSMF1Q92530 271 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 ZNF700Q9H0M5 742 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 RHOJQ9H4E5 214 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 ANKHQ9HCJ1 492 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 COPG1Q9Y678 874 aaKnown RBP20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 SLC22A7Q9Y694 548 aa20.54■□□□□ 0.88
CCDC28B-201ENST00000373602 SGK494L7N484 410 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 CDC7O00311 574 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms