RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SCAMP1O15126 338 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 CNTN5O94779 1100 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 OAS1P00973 400 aaKnown RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 BCHEP06276 602 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 PRKACGP22612 351 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ACVR2AP27037 513 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 BLKP51451 505 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 CREB5Q02930 508 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TLR1Q15399 786 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ARL9Q6T311 187 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 CDHR3Q6ZTQ4 885 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 Q6ZVU0 165 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 HDDC3Q8N4P3 179 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 SUN5Q8TC36 379 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 PEX13Q92968 403 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ARMC5Q96C12 935 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 FBXL20Q96IG2 436 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 LRCH3Q96II8 777 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 HSH2DQ96JZ2 352 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GAL3ST1Q99999 423 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ELAC1Q9H777 363 aaKnown RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 LIN28AQ9H9Z2 209 aaKnown RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 MKS1Q9NXB0 559 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 MED11Q9P086 117 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM150CB9EJG8 249 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ITGA10O75578 1167 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 F2P00734 622 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 RENP00797 406 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 CLCNKAP51800 687 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 MYLK3Q32MK0 819 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 XKR4Q5GH76 650 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 NANOGP8Q6NSW7 305 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 LRRTM4Q86VH4 590 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 KCT2Q8NC54 265 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 KLK6Q92876 244 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 RIPOR3Q96MK2 946 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ADAM7Q9H2U9 754 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 NANOGQ9H9S0 305 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ANKHQ9HCJ1 492 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 CRTAC1Q9NQ79 661 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 HCN4Q9Y3Q4 1203 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TEX46H3BTG2 121 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GMFGO60234 142 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 IL12BP29460 328 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 VLDLRP98155 873 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ST3GAL3Q11203 375 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GPR68Q15743 365 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TICAM1Q8IUC6 712 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 DNAJA4Q8WW22 397 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF382Q96SR6 550 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GABRQQ9UN88 632 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 A0A1W2PRQ8 180 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ELOA3DA6NLF2 546 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 RHPN2P1A8MT19 583 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 KDELR3O43731 214 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 CLIC3O95833 236 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 YES1P07947 543 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PGDP52209 483 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TLE2Q04725 743 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PDGFRLQ15198 375 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TSTQ16762 297 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ELOA3BQ3SY89 546 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 MCEMP1Q8IX19 187 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PRSS58Q8IYP2 241 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 CMTM8Q8IZV2 173 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ELOA3Q8NG57 546 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 OR10Q1Q8NGQ4 319 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 C15orf40Q8WUR7 153 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 HSPBAP1Q96EW2 488 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 SCLYQ96I15 445 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ALPK1Q96QP1 1244 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 RNF11Q9Y3C5 154 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 SDK1Q7Z5N4 2213 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PIRO00625 290 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TLX2O43763 284 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 XPNPEP2O43895 674 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 CPNE3O75131 537 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 FUT4P22083 530 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 VIPR1P32241 457 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 KCNAB2Q13303 367 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 IQCF2Q8IXL9 164 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 AQP11Q8NBQ7 271 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM145Q8NBT3 493 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 CEP76Q8TAP6 659 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 NCSTNQ92542 709 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 LGR4Q9BXB1 951 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 CARS2Q9HA77 564 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 IFT46Q9NQC8 304 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ELOVL2Q9NXB9 296 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 GNB5O14775 395 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ENTPD6O75354 484 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 JUNP05412 331 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 EIF5AP63241 154 aaKnown RBP11.09□□□□□ -0.63
PTPRF-203ENST00000372407 SCRN3Q0VDG4 424 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TOR1AIP1Q5JTV8 583 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 GPRC6AQ5T6X5 926 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 ASB18Q6ZVZ8 466 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM135Q86UB9 458 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 PMEPA1Q969W9 287 aa11.09□□□□□ -0.63
PTPRF-203ENST00000372407 TUBA1CQ9BQE3 449 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms