RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CCDC81Q6ZN84 652 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 TTLL10Q6ZVT0 673 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 NUP54Q7Z3B4 507 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ARMC8Q8IUR7 673 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 IGDCC3Q8IVU1 814 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 OR10H5Q8NGA6 315 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SLC22A8Q8TCC7 542 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 HBEGFQ99075 208 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SLC12A9Q9BXP2 914 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 OR51B5Q9H339 312 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 DCLRE1BQ9H816 532 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SLC40A1Q9NP59 571 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZIM2Q9NZV7 527 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 COL11A1P12107 1806 aaPredicted RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 TMEM221A6NGB7 291 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 M0R296 226 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 AP1G1O43747 822 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 IL7RP16871 459 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 OTX2P32243 289 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 NEK2P51955 445 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 LCTLQ6UWM7 567 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 RTL4Q6ZR62 310 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 CLNKQ7Z7G1 428 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ADAMTS19Q8TE59 1207 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 TLCD1Q96CP7 247 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 IL17FQ96PD4 163 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SH3GL2Q99962 352 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 BOCQ9BWV1 1114 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 DEFB126Q9BYW3 111 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 IL21Q9HBE4 155 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 EXOSC4Q9NPD3 245 aaKnown RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 GALPQ9UBC7 116 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 MYH15Q9Y2K3 1946 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZNF41P51814 821 aaPredicted RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 FAM182AQ5T1J6 154 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 DNAJC9Q8WXX5 260 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 PTGES2Q9H7Z7 377 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 MCCC2Q9HCC0 563 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 RRP8O43159 456 aaKnown RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 IL9P15248 144 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ARSDP51689 593 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 CDKN2DP55273 166 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SLC25A3Q00325 362 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZNF763Q0D2J5 394 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ARHGAP19Q14CB8 494 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 FAM174BQ3ZCQ3 159 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 CDKL4Q5MAI5 379 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 DCAF12Q5T6F0 453 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 C1orf189Q5VU69 101 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 OR4C11Q6IEV9 310 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 GALNT7Q86SF2 657 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZNF761Q86XN6 746 aaPredicted RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 SLC35A5Q9BS91 424 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 PCED1AQ9H1Q7 454 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SLCO1B3Q9NPD5 702 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZCCHC3Q9NUD5 404 aaKnown RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 PSME4Q14997 1843 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SCELO95171 688 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 DRD4P21917 467 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ADPRHP54922 357 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CDC73Q6P1J9 531 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 PAOXQ6QHF9 649 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 MFSD2AQ8NA29 543 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ARRDC2Q8TBH0 407 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CDADC1Q9BWV3 514 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SLITRK2Q9H156 845 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CA5BQ9Y2D0 317 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 AP4S1Q9Y587 144 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 LYVE1Q9Y5Y7 322 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 EFCAB7A8K855 629 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CST1P01037 141 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ENDOUP21128 410 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 ACTR3P61158 418 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 MEF2AQ02078 507 aaPredicted RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 TUBB3Q13509 450 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ENPP2Q13822 863 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 OTUD3Q5T2D3 398 aaPredicted RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 TLDC1Q6P9B6 456 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ZNF786Q8N393 782 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 KCT2Q8NC54 265 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 A0A1B0GVT2 93 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 C1orf226A1L170 272 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 BLACEA4D250 179 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 IFNW1P05000 195 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 FABP3P05413 133 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 IL4RP24394 825 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 MMP12P39900 470 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 HMGCS1Q01581 520 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SLC18A2Q05940 514 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ASTLQ6HA08 431 aaPredicted RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 RNF111Q6ZNA4 994 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SERINC2Q96SA4 455 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 ZNF358Q9NW07 568 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 CXorf51AA0A1B0GTR3 108 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 TRAPPC6AO75865 159 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 SOX30O94993 753 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 FEN1P39748 380 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 SLC7A2P52569 658 aa9.8□□□□□ -0.84
USP54-201ENST00000339859 MRPS15P82914 257 aaKnown RBP9.8□□□□□ -0.84
USP54-201ENST00000339859 ALKBH2Q6NS38 261 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms