RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PPP5CP53041 499 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 TRAM2Q15035 370 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 C6orf136Q5SQH8 315 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PNCKQ6P2M8 343 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 GALNT12Q8IXK2 581 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 DCAF4L2Q8NA75 395 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 AQP11Q8NBQ7 271 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 GPR150Q8NGU9 434 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 AKAP1Q92667 903 aaKnown RBP eCLIP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 MTERF1Q99551 399 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 IKZF4Q9H2S9 585 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CD93Q9NPY3 652 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SOHLH2Q9NX45 425 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 MS4A12Q9NXJ0 267 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 COL18A1P39060 1754 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PIRO00625 290 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 C1QTNF8P60827 252 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PCDH10Q9P2E7 1040 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SCP2D1Q9UJQ7 156 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 DDX60LQ5H9U9 1706 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 FAM25EA8MYX2 175 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 GNB5O14775 395 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC35E2BP0CK96 405 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 ARHGAP1Q07960 439 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 MAP1SQ66K74 1059 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 CFAP206Q8IYR0 622 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PGAP3Q96FM1 320 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 AGPAT4Q9NRZ5 378 aa9.99□□□□□ -0.81
CCDC88A-202ENST00000336838 PPP2R2BQ00005 443 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 MANEALQ5VSG8 457 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 NUP54Q7Z3B4 507 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 KAT2AQ92830 837 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 DOCK1Q14185 1865 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF541Q9H0D2 1346 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 KAT7O95251 611 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ITGB1P05556 798 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 GABRR2P28476 465 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 NCBP2P52298 156 aaKnown RBP eCLIP9.98□□□□□ -0.812e-9■□□□□ 10.4
CCDC88A-202ENST00000336838 GFM1Q96RP9 751 aaKnown RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 EBPLQ9BY08 206 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC6A15Q9H2J7 730 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 BRF2Q9HAW0 419 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SDR39U1Q9NRG7 319 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 GPRC5BQ9NZH0 403 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PCDHGA3Q9Y5H0 932 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SMPD1P17405 629 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 GHRHRQ02643 423 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF234Q14588 700 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PRAMEF14Q5SWL7 426 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PRAMEF13Q5VWM6 474 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 FAM180AQ6UWF9 173 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 OR8J1Q8NGP2 316 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 LRCH3Q96II8 777 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PHOX2BQ99453 314 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 NPAP1Q9NZP6 1156 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 RIPK3Q9Y572 518 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 TRBC2A0A5B9 178 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 LRRC72A6NJI9 287 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 HCN1O60741 890 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 GJB1P08034 283 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 CD1DP15813 335 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 BMP8BP34820 402 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 INHBCP55103 352 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 FBXL22Q6P050 247 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 UNC5DQ6UXZ4 953 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 BMP8AQ7Z5Y6 402 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 DCUN1D3Q8IWE4 304 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SMPDL3AQ92484 453 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 BHLHE41Q9C0J9 482 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SUV39H2Q9H5I1 410 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 GPN2Q9H9Y4 310 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 NMUR1Q9HB89 426 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 TAS2R8Q9NYW2 309 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SDHDO14521 159 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 HSPB3Q12988 150 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 TAF8Q7Z7C8 310 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 TREML1Q86YW5 311 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC44A3Q8N4M1 653 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF433Q8N7K0 673 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 MYRFLQ96LU7 910 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PEBP4Q96S96 227 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 UBQLN2Q9UHD9 624 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 NHSL1Q5SYE7 1610 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 M0R233 179 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 MID1O15344 667 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 IL7P13232 177 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 AZGP1P25311 298 aaKnown RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 PRPF38BQ5VTL8 546 aaKnown RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF675Q8TD23 568 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 HSPBAP1Q96EW2 488 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF597Q96LX8 424 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 A0A1B0GVI7 797 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SOWAHBA6NEL2 793 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 SCGNO76038 276 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 G6PDP11413 515 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 MYCLP1P12525 358 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 LINGO2Q7L985 606 aa9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 VANGL1Q8TAA9 524 aaPredicted RBP9.98□□□□□ -0.81
CCDC88A-202ENST00000336838 OTUB2Q96DC9 234 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms