RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TAPBPO15533 448 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 PRPF4O43172 522 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 SUPT3HO75486 399 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 C1GALT1C1LP0DN25 315 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 MYBL2P10244 700 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 SFTPCP11686 197 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 GMPRP36959 345 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 GDF5P43026 501 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 OR1D4P47884 311 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 HSPA7P48741 367 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 IRF9Q00978 393 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 CDC16Q13042 620 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 SLC9A5Q14940 896 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 C18orf21Q32NC0 220 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 MRPL14Q6P1L8 145 aaKnown RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 GSPT2Q8IYD1 628 aaKnown RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 MFSD9Q8NBP5 474 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 EXT2Q93063 718 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 ISL2Q96A47 359 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 TM4SF19Q96DZ7 209 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 ATOH8Q96SQ7 321 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 CD244Q9BZW8 370 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 ANKZF1Q9H8Y5 726 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 DNAJC11Q9NVH1 559 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 RALYQ9UKM9 306 aaKnown RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 PTRH2Q9Y3E5 179 aaKnown RBP13.35□□□□□ -0.27
LIMS1-201ENST00000332345 ZFYVE26Q68DK2 2539 aa13.35□□□□□ -0.27
LIMS1-201ENST00000332345 IQANK1A0A1B0GTG1 560 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MAP2K7O14733 419 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 KLF7O75840 302 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 RBP1P09455 135 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 FURINP09958 794 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 SLC35G6P0C7Q6 338 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 AHRP35869 848 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 BCL6P41182 706 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 FOLR3P41439 243 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MAGEA12P43365 314 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 AVPR1BP47901 424 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 GLRBP48167 497 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MEF2AQ02078 507 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 OCA2Q04671 838 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 PWP1Q13610 501 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 COL9A2Q14055 689 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 RBBP5Q15291 538 aaKnown RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 TSNAXIP1Q2TAA8 658 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 LINC00303Q3SY05 128 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 ATP1A1-AS1Q5TC04 95 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 TIFABQ6ZNK6 161 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 VN1R4Q7Z5H5 301 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 TMPRSS11BQ86T26 416 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 ASPGQ86U10 573 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 RAB43Q86YS6 212 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 SNX31Q8N9S9 440 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 TRPV3Q8NET8 790 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 OR2Y1Q8NGV0 311 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 UBLCP1Q8WVY7 318 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MMABQ96EY8 250 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 C10orf90Q96M02 699 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 GPR78Q96P69 363 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 IP6K3Q96PC2 410 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 PITHD1Q9GZP4 211 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 DRC3Q9H069 523 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 SLC26A1Q9H2B4 701 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 WDR54Q9H977 334 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 SYNPO2LQ9H987 977 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 SLC22A11Q9NSA0 550 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 NXT1Q9UKK6 140 aaKnown RBP13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MAN2B2Q9Y2E5 1009 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 MAU2Q9Y6X3 613 aa13.34□□□□□ -0.27
LIMS1-201ENST00000332345 ATMQ13315 3056 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 UBXN8O00124 270 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 CCNT2O60583 730 aaKnown RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 MED26O95402 600 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 GFAPP14136 432 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ITGAXP20702 1163 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 FBLP22087 321 aaKnown RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 GCAP28676 217 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 SCTRP47872 440 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 NFKB2Q00653 900 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 RGS1Q08116 209 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 PDK4Q16654 411 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 SOWAHCQ53LP3 525 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ATG9BQ674R7 924 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 SLCO4C1Q6ZQN7 724 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 KRT78Q8N1N4 520 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 METTL27Q8N6F8 245 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ZNF740Q8NDX6 193 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 TTLQ8NG68 377 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 SLC39A7Q92504 469 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 NACC2Q96BF6 587 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 SCYL1Q96KG9 808 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 TMEM79Q9BSE2 394 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 YIPF2Q9BWQ6 316 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 EPB41L4BQ9H329 900 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 EHD1Q9H4M9 534 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 PPCSQ9HAB8 311 aa13.33□□□□□ -0.28
LIMS1-201ENST00000332345 PSMC3IPQ9P2W1 217 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ZNF282Q9UDV7 671 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-201ENST00000332345 ZFP69BQ9UJL9 534 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms