RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 KRT78Q8N1N4 520 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 FAM160A2Q8N612 972 aaPredicted RBP14.95□□□□□ -0.02
LSM6-201ENST00000296581 KRTCAP2Q8N6L1 136 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 FAM174AQ8TBP5 190 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 NUDT8Q8WV74 236 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 CHTF18Q8WVB6 975 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 IL1RL2Q9HB29 575 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 DMRT3Q9NQL9 472 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SIRT5Q9NXA8 310 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SUCOQ9UBS9 1254 aaKnown RBP14.95□□□□□ -0.02
LSM6-201ENST00000296581 KDM1AO60341 852 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SLC6A2P23975 617 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 NDUFS1P28331 727 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SLC7A2P52569 658 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 MEF2AQ02078 507 aaPredicted RBP14.95□□□□□ -0.02
LSM6-201ENST00000296581 ACSM2AQ08AH3 577 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 ACSM2BQ68CK6 577 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SLC2A7Q6PXP3 512 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 TMIGD1Q6UXZ0 262 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 RIMKLAQ8IXN7 391 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 UBALD2Q8IYN6 164 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 RNF148Q8N7C7 305 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 ZNF740Q8NDX6 193 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 OR4K1Q8NGD4 311 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 CLHC1Q8NHS4 586 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SLC13A3Q8WWT9 602 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 TMEM74Q96NL1 305 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 PCED1AQ9H1Q7 454 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 XKR8Q9H6D3 395 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 NT5DC2Q9H857 520 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 SH3GLB1Q9Y371 365 aa14.95□□□□□ -0.02
LSM6-201ENST00000296581 PLXND1Q9Y4D7 1925 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PRAMEF33A0A0G2JMD5 474 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 SPTY2D1-AS1A0A0U1RR47 76 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PRORSD1PA6NEY8 169 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 ACOT8O14734 319 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 MAP3K7O43318 606 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PRICKLE3O43900 615 aaPredicted RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 FKBP6O75344 327 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 TNFP01375 233 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 HNRNPCP07910 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
LSM6-201ENST00000296581 ETS2P15036 469 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PSMB5P28074 263 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 REEP5Q00765 189 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 MS4A2Q01362 244 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 EIF2B5Q13144 721 aaKnown RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 RCN1Q15293 331 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 FAM174BQ3ZCQ3 159 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 SPIN4Q56A73 249 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 AAGABQ6PD74 315 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PRR23BQ6ZRT6 265 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 SLC15A3Q8IY34 581 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 TESCQ96BS2 214 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 TSSK3Q96PN8 268 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PITHD1Q9GZP4 211 aaPredicted RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 RHBGQ9H310 441 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 CUEDC1Q9NWM3 386 aaPredicted RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 ZNF624Q9P2J8 865 aaPredicted RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 A0A0J9YVX5 310 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 NME4O00746 187 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PRMT3O60678 531 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 MYO1DO94832 1006 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 THEGLP0DJG4 465 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 F3P13726 295 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 CXCR2P25025 360 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 CCR8P51685 355 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 C21orf58P58505 322 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 RAE1P78406 368 aaKnown RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 CAPRIN1Q14444 709 aaKnown RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 SPATS1Q496A3 300 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 SPANXN4Q5MJ08 99 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 GALNT18Q6P9A2 607 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 VN1R5Q7Z5H4 357 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 ZNF554Q86TJ5 538 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PJA1Q8NG27 643 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 OR2A1Q8NGT9 310 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 GPBAR1Q8TDU6 330 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 ASB9Q96DX5 294 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 AIF1LQ9BQI0 150 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 CMTM6Q9NX76 183 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 STX18Q9P2W9 335 aaKnown RBP14.94□□□□□ -0.02
LSM6-201ENST00000296581 ADGRE2Q9UHX3 823 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PCDHB11Q9Y5F2 797 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 PCDHA9Q9Y5H5 950 aa14.94□□□□□ -0.02
LSM6-201ENST00000296581 HEATR5BQ9P2D3 2071 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 BCAS2O75934 225 aaPredicted RBP14.93□□□□□ -0.02
LSM6-201ENST00000296581 PGRP06401 933 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 RPS9P46781 194 aaKnown RBP14.93□□□□□ -0.02
LSM6-201ENST00000296581 SESN3P58005 492 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 PRDX1Q06830 199 aaKnown RBP14.93□□□□□ -0.02
LSM6-201ENST00000296581 ILF3Q12906 894 aaKnown RBP eCLIP14.93□□□□□ -0.02
LSM6-201ENST00000296581 TRIM25Q14258 630 aaKnown RBP14.93□□□□□ -0.02
LSM6-201ENST00000296581 FZD2Q14332 565 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 LIN52Q52LA3 116 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 DLEU7Q6UYE1 221 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 DHDDSQ86SQ9 333 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 CAMKK1Q8N5S9 505 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 C1orf52Q8N6N3 182 aaKnown RBP14.93□□□□□ -0.02
LSM6-201ENST00000296581 TMEM125Q96AQ2 219 aa14.93□□□□□ -0.02
LSM6-201ENST00000296581 EBPLQ9BY08 206 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms