RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 UBTD2Q8WUN7 234 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 REEP1Q9H902 201 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 STX18Q9P2W9 335 aaKnown RBP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 BLOC1S6Q9UL45 172 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF232Q9UNY5 417 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 PRSS51A0A1B0GVH4 220 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SLC5A10A0PJK1 596 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 ALAS2P22557 587 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 HHEXQ03014 270 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 GPAT3Q53EU6 434 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 GCNT6Q5T4J0 391 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 FAM91A1Q658Y4 838 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 PACS2Q86VP3 889 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 NCSTNQ92542 709 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 NEIL2Q969S2 332 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 CCDC90BQ9GZT6 254 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 PELI2Q9HAT8 420 aa11.18□□□□□ -0.62
VPS4A-201ENST00000254950 SAMD4AQ9UPU9 718 aaKnown RBP11.18□□□□□ -0.62
VPS4A-201ENST00000254950 OTOL1A6NHN0 477 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 PSIP1O75475 530 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SERPINB7O75635 380 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 NPPAP01160 153 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TRPC1P48995 793 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 KHDC1Q4VXA5 237 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TICAM1Q8IUC6 712 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 XAGE5Q8WWM1 108 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 EID2BQ96D98 161 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 NSMCE3Q96MG7 304 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF607Q96SK3 696 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM184CQ9NVA4 438 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 EXD2Q9NVH0 621 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TRNAU1APQ9NX07 287 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 COLQQ9Y215 455 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 KIR2DS5A0A0G2JLQ3 304 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 A0A0G2JNG1 304 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 KIR2DS3K7RE56 304 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SUV39H1O43463 412 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SLC28A2O43868 658 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 MGRN1O60291 552 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 GPIP06744 558 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 MTHFD1P11586 935 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 XRCC1P18887 633 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 CSNK2A2P19784 350 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 PRR5P85299 388 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TRAF3Q13114 568 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 KIR2DS5Q14953 304 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SMU1Q2TAY7 513 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 CATSPEREQ5SY80 951 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 ADAMTS15Q8TE58 950 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SLC7A6OSQ96CW6 309 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 NAF1Q96HR8 494 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF184Q99676 751 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 C17orf62Q9BQA9 187 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 ADNPQ9H2P0 1102 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 SDR39U1Q9NRG7 319 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 MAP4K5Q9Y4K4 846 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 CLIC1O00299 241 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 F3P13726 295 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 NT5EP21589 574 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 IMPA1P29218 277 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 MLLT3P42568 568 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 HK3P52790 923 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 BTN3A2P78410 334 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 TRAP1Q12931 704 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 DUOXA1Q1HG43 343 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 MTX3Q5HYI7 312 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 BLOC1S3Q6QNY0 202 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 LARP4Q71RC2 724 aaKnown RBP eCLIP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 AMIGO2Q86SJ2 522 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 INSM2Q96T92 566 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 GTPBP2Q9BX10 602 aaKnown RBP11.17□□□□□ -0.62
VPS4A-201ENST00000254950 BRINP2Q9C0B6 783 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 PHF11Q9UIL8 331 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 HS3ST3A1Q9Y663 406 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 BRWD1Q9NSI6 2320 aa11.17□□□□□ -0.62
VPS4A-201ENST00000254950 PLRG1O43660 514 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ZNF821O75541 412 aaPredicted RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 UMPSP11172 480 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 AQP1P29972 269 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 CLDN8P56748 225 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 INAVAQ3KP66 663 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 KIAA0907Q7Z7F0 614 aaPredicted RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 OR52E1Q8NGJ3 308 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 OR5K2Q8NHB8 316 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ZDHHC1Q8WTX9 485 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 REEP4Q9H6H4 257 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 FARSBQ9NSD9 589 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 OR6C2Q9NZP2 312 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 A0A1W2PPC1 479 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TOR1BO14657 336 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ZSCAN9O15535 394 aaPredicted RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 MATN4O95460 622 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 GSK3BP49841 420 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 KIAA1024LP59773 190 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ASB9Q96DX5 294 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 CLIP3Q96DZ5 547 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 CNBD2Q96M20 576 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 F2RL3Q96RI0 385 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 FGF22Q9HCT0 170 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 SUCOQ9UBS9 1254 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms