RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PCP4L1A6NKN8 68 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 FAM220BPB1ANY3 271 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 NOS1APO75052 506 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 CELF2O95319 508 aaKnown RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 IGFBP1P08833 259 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 HLA-DPA1P20036 260 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 RUNX1T1Q06455 604 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 CDH18Q13634 790 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 TBCEQ15813 527 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 LEXMQ3ZCV2 418 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 C10orf120Q5SQS8 335 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 LIPKQ5VXJ0 399 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 AFTPHQ6ULP2 937 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 SBSNQ6UWP8 590 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 TTC9BQ8N6N2 239 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 SIMC1Q8NDZ2 872 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 OR8H1Q8NGG4 311 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 PPP1R2P1Q96PQ5 205 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 CCL27Q9Y4X3 112 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 TSC2P49815 1807 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 DNAJC25-GNG10A0A024R161 153 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 ZNF780AO75290 641 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 ALPIP09923 528 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 CYP2A6P11509 494 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 CLCN7P51798 805 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 VMACQ2NL98 169 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 TMIGD1Q6UXZ0 262 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 ZSWIM9Q86XI8 627 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 C2orf69Q8N8R5 385 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 SPERTQ8NA61 448 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 NELL1Q92832 810 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 PMEPA1Q969W9 287 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 SMAD5Q99717 465 aaKnown RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 TMEM121BQ9BXQ6 578 aaPredicted RBP13.89□□□□□ -0.19
SDC1-201ENST00000254351 MAGIXQ9H6Y5 334 aa13.89□□□□□ -0.19
SDC1-201ENST00000254351 CIB4A0PJX0 185 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 FABP12A6NFH5 140 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ARL5CA6NH57 179 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 HMX3A6NHT5 357 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ARHGEF9O43307 516 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 CDRT1O95170 752 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 GJA5P36382 358 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 MAGEA11P43364 429 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 SSX1Q16384 188 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ATG9BQ674R7 924 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 LIMS2Q7Z4I7 341 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 OR10G2Q8NGC3 310 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 OR9Q1Q8NGQ5 310 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 GRPEL2Q8TAA5 225 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 MTERF3Q96E29 417 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 RNF170Q96K19 258 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 COL21A1Q96P44 957 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ELOVL6Q9H5J4 265 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ZNF226Q9NYT6 803 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 DNAJC27Q9NZQ0 273 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 NLKQ9UBE8 527 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 CRNNQ9UBG3 495 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 CFL2Q9Y281 166 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 PRKAB1Q9Y478 270 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 PTCH2Q9Y6C5 1203 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 MANBAO00462 879 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 KCNK5O95279 499 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 C9P02748 559 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 CYP17A1P05093 508 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 UBL4AP11441 157 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 GZMMP51124 257 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 DGKKQ5KSL6 1271 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ARTNQ5T4W7 220 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 IQCF2Q8IXL9 164 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 UMODL1-AS1Q8N2C9 162 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 FAM109AQ8N4B1 249 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 NLGN4YQ8NFZ3 816 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 HRASLS5Q96KN8 279 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 FRMD6Q96NE9 622 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 MKRN2Q9H000 416 aaKnown RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 LINC00597Q9H2U6 94 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ANKHQ9HCJ1 492 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 COMMD3Q9UBI1 195 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 SATB2Q9UPW6 733 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 YARS2Q9Y2Z4 477 aaKnown RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 AOC2O75106 756 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 SLC25A14O95258 325 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 SLC25A27O95847 323 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 IGLV3-25P01717 112 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ITGA2P17301 1181 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ITPKAP23677 461 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ZNF140P52738 457 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 ABHD18Q0P651 414 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 HNRNPA0Q13151 305 aaKnown RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 DSC3Q14574 896 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 TATDN3Q17R31 274 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.88□□□□□ -0.19
SDC1-201ENST00000254351 STK40Q8N2I9 435 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 GPR150Q8NGU9 434 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 SH3KBP1Q96B97 665 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 PHF21AQ96BD5 680 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 CINPQ9BW66 212 aaPredicted RBP13.88□□□□□ -0.19
SDC1-201ENST00000254351 SLA2Q9H6Q3 261 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 POPDC3Q9HBV1 291 aa13.88□□□□□ -0.19
SDC1-201ENST00000254351 ACOXLQ9NUZ1 547 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms