RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 DPEP3Q9H4B8 488 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CCDC86Q9H6F5 360 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 C19orf12Q9NSK7 152 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TRPC4Q9UBN4 977 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HACL1Q9UJ83 578 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ACSL6Q9UKU0 697 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HIST1H2ABP04908 130 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ADRB2P07550 413 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GM2AP17900 193 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GADD45AP24522 165 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 UBE2UQ5VVX9 321 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 AWAT2Q6E213 333 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2IRD2BQ6EKJ0 949 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RTL4Q6ZR62 310 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HIST3H2AQ7L7L0 130 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GTF2IRD2Q86UP8 949 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 HIST1H2ACQ93077 130 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 INPP5EQ9NRR6 644 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 BCL9LQ86UU0 1499 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 ALDH1A2O94788 518 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 TFP02787 698 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 JUNP05412 331 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 CREB1P16220 341 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 GGT1P19440 569 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RPL35P42766 123 aaKnown RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 MTM1Q13496 603 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 LRP8Q14114 963 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 RCAN2Q14206 197 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 FGFBP1Q14512 234 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 AKIRIN2Q53H80 203 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 AADACL2Q6P093 401 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 LRRC28Q86X40 367 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-220ENST00000641603 KREMEN1Q96MU8 473 aa4.55□□□□□ -1.68
SCN1A-220ENST00000641603 A8MT66 165 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 F5H5P2 479 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PCDH17O14917 1159 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CDRT1O95170 752 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 TFPTP0C1Z6 253 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 BCKDHAP12694 445 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 HSD3B1P14060 373 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 HSD3B2P26439 372 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PDHA2P29803 388 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 FKBP1AP62942 108 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SLC22A25Q6T423 547 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 TXNRD3Q86VQ6 643 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 C1orf216Q8TAB5 229 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 YIPF4Q9BSR8 244 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ZDHHC5Q9C0B5 715 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CD300AQ9UGN4 299 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ATF5Q9Y2D1 282 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CACNG2Q9Y698 323 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 KAT6AQ92794 2004 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 A0A0G2JMP0 313 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PPM1BO75688 479 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 TPT1P13693 172 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ZP3P21754 424 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 IVDP26440 423 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SERPINA4P29622 427 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PSMD8P48556 350 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CASP7P55210 303 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ZMYND11Q15326 602 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CLLU1Q5K131 121 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PAPD4Q6PIY7 484 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CLRN3Q8NCR9 226 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 OR4M2Q8NGB6 313 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 COQ8AQ8NI60 647 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ELF4Q99607 663 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PIP5K1AQ99755 562 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SLC29A1Q99808 456 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 TCF25Q9BQ70 676 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SLC25A32Q9H2D1 315 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 MOCS1Q9NZB8 636 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF490Q9ULM2 529 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 NCF1BA6NI72 391 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 NCF1CA8MVU1 366 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SMLR1H3BR10 107 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CAPN5O15484 640 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 RGS9O75916 674 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 MT-CO1P00395 513 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 TSPAN8P19075 237 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 EFNA1P20827 205 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 CACNG1Q06432 222 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SNTB2Q13425 540 aaKnown RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 BTG3Q14201 252 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 DSC3Q14574 896 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SYT6Q5T7P8 510 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF730Q6ZMV8 503 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 DENND1CQ8IV53 801 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 OR6V1Q8N148 313 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 FCRL4Q96PJ5 515 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 OR5B12Q96R08 314 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 GPATCH2LQ9NWQ4 482 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 KLHL9Q9P2J3 617 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 A0A1W2PRB8 838 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 GXYLT2A0PJZ3 443 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 GGT3PA6NGU5 568 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 C2CD4BA6NLJ0 364 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 F5H0A9 414 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-220ENST00000641603 SDHDO14521 159 aa4.54□□□□□ -1.68
SCN1A-220ENST00000641603 PIP5K1BO14986 540 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms