RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ADCK2Q7Z695 626 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 PLD3Q8IV08 490 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 PPFIBP2Q8ND30 876 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 ADAMTS18Q8TE60 1221 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 MAGED4Q96JG8 741 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 VN1R1Q9GZP7 353 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 TSPAN10Q9H1Z9 355 aaPredicted RBP18.36■□□□□ 0.53
CLN3-262ENST00000637699 KLHL1Q9NR64 748 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 UTP6Q9NYH9 597 aaKnown RBP18.36■□□□□ 0.53
CLN3-262ENST00000637699 GALPQ9UBC7 116 aa18.36■□□□□ 0.53
CLN3-262ENST00000637699 GOLGA8KD6RF30 607 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 GOLGA8TH3BQL2 631 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 MYO1CO00159 1063 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 TXNDC9O14530 226 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 ZSCAN5DPP0CG00 497 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 EZRP15311 586 aaKnown RBP18.35■□□□□ 0.53
CLN3-262ENST00000637699 CHRM3P20309 590 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 AVPR1BP47901 424 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 PNLIPRP1P54315 467 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 GBX1Q14549 363 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 KLHL38Q2WGJ6 581 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 MINDY4Q4G0A6 757 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 ACER2Q5QJU3 275 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 CES3Q6UWW8 571 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 CPEB2Q7Z5Q1 589 aaKnown RBP18.35■□□□□ 0.53
CLN3-262ENST00000637699 SDCCAG8Q86SQ7 713 aaPredicted RBP18.35■□□□□ 0.53
CLN3-262ENST00000637699 SHISA5Q8N114 240 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 BEST3Q8N1M1 668 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 CCDC89Q8N998 374 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 OR9A4Q8NGU2 314 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 MTFMTQ96DP5 389 aaKnown RBP18.35■□□□□ 0.53
CLN3-262ENST00000637699 CYTH2Q99418 400 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 PKP4Q99569 1192 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 HES7Q9BYE0 225 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 ANKRD10Q9NXR5 420 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 PAK5Q9P286 719 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 CRYL1Q9Y2S2 319 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 SCN2AQ99250 2005 aa18.35■□□□□ 0.53
CLN3-262ENST00000637699 OR2W5A6NFC9 320 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 HAT1O14929 419 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 TTI1O43156 1089 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 PSIP1O75475 530 aaKnown RBP18.34■□□□□ 0.53
CLN3-262ENST00000637699 CCNDBP1O95273 360 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 VAPBO95292 243 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 AGAP20933 346 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 ATP5DP30049 168 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 FAM53BQ14153 422 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 ARHGAP19Q14CB8 494 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 NDUFA9Q16795 377 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 LPGAT1Q92604 370 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 HES6Q96HZ4 224 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 ZNF354BQ96LW1 612 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 SIGLEC12Q96PQ1 595 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 KCNK13Q9HB14 408 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 FAM114A2Q9NRY5 505 aa18.34■□□□□ 0.53
CLN3-262ENST00000637699 NCOA6Q14686 2063 aaPredicted RBP18.34■□□□□ 0.53
CLN3-262ENST00000637699 KRT38O76015 456 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 CLDN14O95500 239 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 SLC16A8O95907 504 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 CATP04040 527 aaKnown RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 ARNTP27540 789 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 SSTR2P30874 369 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 RPL22P35268 128 aaKnown RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 KIR3DL1P43629 444 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 KRTAP10-9P60411 292 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 ALDH6A1Q02252 535 aaKnown RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 TUBA3CQ13748 450 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 PLAG1Q6DJT9 500 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 MRNIPQ6NTE8 343 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 TUBA3EQ6PEY2 450 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 NCCRP1Q6ZVX7 275 aaPredicted RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 SPPL2CQ8IUH8 684 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 THAP3Q8WTV1 239 aaPredicted RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 MFSD3Q96ES6 412 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 GPR137Q96N19 417 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 FRMD8P1Q9BZ68 369 aaPredicted RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 IL22Q9GZX6 179 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 BFARQ9NZS9 450 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 C19orf25Q9UFG5 118 aaPredicted RBP18.33■□□□□ 0.52
CLN3-262ENST00000637699 ZNF835Q9Y2P0 537 aa18.33■□□□□ 0.52
CLN3-262ENST00000637699 NPIPA5E9PKD4 350 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 H3BMM5 538 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 SMAPO00193 183 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 SYF2O95926 243 aaKnown RBP18.32■□□□□ 0.52
CLN3-262ENST00000637699 ESR1P03372 595 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 MGAT1P26572 445 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 HSD17B2P37059 387 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 CD96P40200 585 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 NPY2RP49146 381 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 KIF5AQ12840 1032 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 KCNJ11Q14654 390 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 KRTCAP3Q53RY4 240 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 SEL1L2Q5TEA6 688 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 THEMIS2Q5TEJ8 643 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 SPINK14Q6IE38 97 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 H3F3CQ6NXT2 135 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 PRSS41Q7RTY9 318 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 CRLF3Q8IUI8 442 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 MDS2Q8NDY4 140 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 OR51Q1Q8NH59 317 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms