RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TMEM207Q6UWW9 146 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 MBOAT1Q6ZNC8 495 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 AENQ8WTP8 325 aaKnown RBP18.34■□□□□ 0.53
CLN3-260ENST00000637578 EPN3Q9H201 632 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 EPB41L4BQ9H329 900 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 RHOJQ9H4E5 214 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 TMEM184CQ9NVA4 438 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 TXNDC16Q9P2K2 825 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 NXT1Q9UKK6 140 aaKnown RBP18.34■□□□□ 0.53
CLN3-260ENST00000637578 RAB21Q9UL25 225 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 KCNE1BA0A087WTH5 132 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 H7BY64 318 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 HAT1O14929 419 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 FAM155BO75949 473 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 WISP1O95388 367 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 IGHEP01854 428 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 ABHD2P08910 425 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 MMP11P24347 488 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 GP5P40197 560 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 AP1S2P56377 157 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 TLE1Q04724 770 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 DCAF10Q5QP82 559 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 THEMIS2Q5TEJ8 643 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 GARNL3Q5VVW2 1013 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 CSNK1A1LQ8N752 337 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 FDCSPQ8NFU4 85 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 ANKRD7Q92527 254 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 MRRFQ96E11 262 aaKnown RBP18.34■□□□□ 0.53
CLN3-260ENST00000637578 MVB12AQ96EY5 273 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 VPS39Q96JC1 886 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 FER1L6-AS2Q96M78 137 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 PRAP1Q96NZ9 151 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 ZNF304Q9HCX3 659 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 P4HTMQ9NXG6 502 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 CTSFQ9UBX1 484 aa18.34■□□□□ 0.53
CLN3-260ENST00000637578 RUVBL1Q9Y265 456 aaKnown RBP18.34■□□□□ 0.53
CLN3-260ENST00000637578 IGLV3-12A0A075B6K2 115 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 A0A087WUV0 522 aaPredicted RBP18.33■□□□□ 0.52
CLN3-260ENST00000637578 PYCARD-AS1I3L0S3 204 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 ZNF37AP17032 561 aaPredicted RBP18.33■□□□□ 0.52
CLN3-260ENST00000637578 CCND1P24385 295 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 CSRP3P50461 194 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 PGDP52209 483 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 SOX8P57073 446 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 ILF2Q12905 390 aaKnown RBP18.33■□□□□ 0.52
CLN3-260ENST00000637578 PRAMEF13Q5VWM6 474 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 RBBP8Q99708 897 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 TRIM4Q9C037 500 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 ATG10Q9H0Y0 220 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 IKZF3Q9UKT9 509 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 NOVA2Q9UNW9 492 aaKnown RBP18.33■□□□□ 0.52
CLN3-260ENST00000637578 MAU2Q9Y6X3 613 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 TENM4Q6N022 2769 aa18.33■□□□□ 0.52
CLN3-260ENST00000637578 FAM95CA0A1B0GW59 222 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 TXNDC9O14530 226 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 ENO2P09104 434 aaPredicted RBP18.32■□□□□ 0.52
CLN3-260ENST00000637578 HIST1H2AGP0C0S8 130 aaPredicted RBP18.32■□□□□ 0.52
CLN3-260ENST00000637578 ATXN8OSP0DMR3 200 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 NPPBP16860 134 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 HIST1H2ADP20671 130 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 NAE1Q13564 534 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 SLC29A2Q14542 456 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 HKDC1Q2TB90 917 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 EMBQ6PCB8 327 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 LCTLQ6UWM7 567 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 SBSNQ6UWP8 590 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 METTL27Q8N6F8 245 aaPredicted RBP18.32■□□□□ 0.52
CLN3-260ENST00000637578 TEX19Q8NA77 164 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 OR56A3Q8NH54 315 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 RERGQ96A58 199 aaPredicted RBP18.32■□□□□ 0.52
CLN3-260ENST00000637578 HIST1H2AHQ96KK5 128 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 SMAD5Q99717 465 aaKnown RBP18.32■□□□□ 0.52
CLN3-260ENST00000637578 HIST1H2AJQ99878 128 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 H2AFJQ9BTM1 129 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 NUDT9Q9BW91 350 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 ABCF3Q9NUQ8 709 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 SH2B3Q9UQQ2 575 aa18.32■□□□□ 0.52
CLN3-260ENST00000637578 AGPSO00116 658 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 PEX12O00623 359 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 SOCS6O14544 535 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 TUBBP07437 444 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 TAS2R39P59534 338 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 CSNK1G2P78368 415 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 PPP1R3AQ16821 1122 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 GRTP1Q5TC63 336 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 PLD3Q8IV08 490 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 UBLCP1Q8WVY7 318 aaPredicted RBP18.31■□□□□ 0.52
CLN3-260ENST00000637578 FBXL8Q96CD0 374 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 THAP11Q96EK4 314 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 CABS1Q96KC9 395 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 ARL15Q9NXU5 204 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 ZNF282Q9UDV7 671 aaPredicted RBP18.31■□□□□ 0.52
CLN3-260ENST00000637578 CDC14AQ9UNH5 594 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 MTO1Q9Y2Z2 717 aaKnown RBP18.31■□□□□ 0.52
CLN3-260ENST00000637578 ZNF451Q9Y4E5 1061 aa18.31■□□□□ 0.52
CLN3-260ENST00000637578 MDC1Q14676 2089 aaKnown RBP18.31■□□□□ 0.52
CLN3-260ENST00000637578 P2RX6O15547 441 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 FOXS1O43638 330 aa18.3■□□□□ 0.52
CLN3-260ENST00000637578 WISP3O95389 354 aaPredicted RBP18.3■□□□□ 0.52
CLN3-260ENST00000637578 SAT1P21673 171 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms