RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SERTAD3Q9UJW9 196 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 PLCL2Q9UPR0 1127 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 PCM1Q15154 2024 aa17.06■□□□□ 0.32
CLN3-247ENST00000636351 NBASA2RRP1 2371 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 SYCE1LA8MT33 242 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 TARM1B6A8C7 271 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 MKRN2OSH3BPM6 223 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 NRP2O60462 931 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 WDR47O94967 919 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 TIAF1O95411 115 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 MSL3P1P0C860 447 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 CDH1P12830 882 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 PTCHD3Q3KNS1 767 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 PWWP2BQ6NUJ5 590 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 LCTLQ6UWM7 567 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 ISCA2Q86U28 154 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 CNPY4Q8N129 248 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 TCAIMQ8N3R3 496 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 OR1L3Q8NH93 324 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 OR2W6PQ8NHA6 318 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 RHBDF1Q96CC6 855 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 CABS1Q96KC9 395 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 PLCD4Q9BRC7 762 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 CUEDC1Q9NWM3 386 aaPredicted RBP17.05■□□□□ 0.32
CLN3-247ENST00000636351 POLHQ9Y253 713 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 DYRK1BQ9Y463 629 aa17.05■□□□□ 0.32
CLN3-247ENST00000636351 A0A0J9YVX5 310 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 TLDC2A0PJX2 215 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 CDC14CA4D256 554 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 OR2A25A4D2G3 310 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 E7EQ34 232 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 UBXN8O00124 270 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 CPNE3O75131 537 aaKnown RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 SCRG1O75711 98 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 OR2B3O76000 313 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 MT-ND3P03897 115 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 KRT15P19012 456 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 ACAP2Q15057 778 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 TSNAXIP1Q2TAA8 658 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 C18orf21Q32NC0 220 aaPredicted RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 FBXO48Q5FWF7 155 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 SULT1C3Q6IMI6 304 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 TCTN3Q6NUS6 607 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 TIFABQ6ZNK6 161 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 THOC6Q86W42 341 aaKnown RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 MCATQ8IVS2 390 aaKnown RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 PLD6Q8N2A8 252 aaKnown RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 DNAJC22Q8N4W6 341 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 MIB2Q96AX9 1013 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 ATOH8Q96SQ7 321 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 SELENOSQ9BQE4 189 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 CNOT10Q9H9A5 744 aaKnown RBP17.04■□□□□ 0.32
CLN3-247ENST00000636351 EURLQ9NYK6 297 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 KCND3Q9UK17 655 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 SNX7Q9UNH6 387 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 SH2B3Q9UQQ2 575 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 MAN2B2Q9Y2E5 1009 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 KLK4Q9Y5K2 254 aa17.04■□□□□ 0.32
CLN3-247ENST00000636351 SPTBP11277 2137 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 IGKV1-8A0A0C4DH67 115 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 H7BY64 318 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 GOLGA8RI6L899 631 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 HAT1O14929 419 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 HCRTR1O43613 425 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CTSVO60911 334 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CDH16O75309 829 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 RFPL1O75677 317 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 IPO13O94829 963 aaKnown RBP17.03■□□□□ 0.32
CLN3-247ENST00000636351 NUDT17P0C025 328 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CCNYL3P0C7X3 344 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 COL6A2P12110 1019 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 GP1BBP13224 206 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 GFAPP14136 432 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 HSPA7P48741 367 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 MLLT10P55197 1068 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 DNASE1L3Q13609 305 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CDKL4Q5MAI5 379 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 PAQR7Q86WK9 346 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 TDRPQ86YL5 185 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 MREGQ8N565 214 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 FAM26EQ8N5C1 309 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 SNX31Q8N9S9 440 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 TEX19Q8NA77 164 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 PDPRQ8NCN5 879 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 RHEBL1Q8TAI7 183 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 PRAP1Q96NZ9 151 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 FCRL4Q96PJ5 515 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 ZFYVE21Q9BQ24 234 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 ZNF358Q9NW07 568 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CPSF2Q9P2I0 782 aaKnown RBP17.03■□□□□ 0.32
CLN3-247ENST00000636351 SLC22A14Q9Y267 594 aa17.03■□□□□ 0.32
CLN3-247ENST00000636351 CCDC189A1A4V9 331 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 ZSCAN9O15535 394 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 ERLIN1O75477 346 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 CREG1O75629 220 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 NTRK1P04629 796 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 RBP1P09455 135 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 EZRP15311 586 aaKnown RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 HRH2P25021 359 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 GDF5P43026 501 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms