RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SLC16A12Q6ZSM3 486 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 C3orf58Q8NDZ4 430 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 DYNC2LI1Q8TCX1 351 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 GORASP2Q9H8Y8 452 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 SMURF1Q9HCE7 757 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 ANKHQ9HCJ1 492 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 RGS17Q9UGC6 210 aaPredicted RBP10.71□□□□□ -0.69
CLN3-244ENST00000636147 ING4Q9UNL4 249 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 PCDHB1Q9Y5F3 818 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 STRCP1A6NGW2 1772 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 MEN1O00255 615 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 MTX2O75431 263 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 OR2B3O76000 313 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 CRYZL1O95825 349 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 CAPNS1P04632 268 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 RPS3P23396 243 aaKnown RBP eCLIP10.71□□□□□ -0.694e-6■■□□□ 12.9
CLN3-244ENST00000636147 ITGA1P56199 1179 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 SERINC3Q13530 473 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 PCBP1Q15365 356 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLN3-244ENST00000636147 SF1Q15637 639 aaKnown RBP10.71□□□□□ -0.69
CLN3-244ENST00000636147 FBXO43Q4G163 708 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 WDR45BQ5MNZ6 344 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 GDPD3Q7L5L3 318 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 LAPTM4BQ86VI4 370 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 ZSWIM9Q86XI8 627 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 UMODL1-AS1Q8N2C9 162 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 AQP11Q8NBQ7 271 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 HJURPQ8NCD3 748 aaPredicted RBP10.71□□□□□ -0.69
CLN3-244ENST00000636147 OR4K1Q8NGD4 311 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 SNAPC3Q92966 411 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 ACAT2Q9BWD1 397 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 KCNH6Q9H252 994 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 CARS2Q9HA77 564 aaKnown RBP10.71□□□□□ -0.69
CLN3-244ENST00000636147 MAPRE3Q9UPY8 281 aa10.71□□□□□ -0.69
CLN3-244ENST00000636147 MEIOCA2RUB1 952 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 TTC34A8MYJ7 566 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 SLC2A2P11168 524 aaPredicted RBP10.71□□□□□ -0.7
CLN3-244ENST00000636147 IL7P13232 177 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 TNFSF8P32971 234 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 FEN1P39748 380 aaKnown RBP10.71□□□□□ -0.7
CLN3-244ENST00000636147 NKX3-2P78367 333 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 VLDLRP98155 873 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 CNTN1Q12860 1018 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 ZNF267Q14586 743 aaPredicted RBP10.71□□□□□ -0.7
CLN3-244ENST00000636147 POM121L1PQ3SYA9 428 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 CYHR1Q6ZMK1 362 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 DPY19L3Q6ZPD9 716 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 TPGS1Q6ZTW0 290 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 GPR142Q7Z601 462 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 CACTIN-AS1Q8N1I8 211 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 KCNJ9Q92806 393 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 TXNDC15Q96J42 360 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 CEP295NLQ96MC4 621 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 WACQ9BTA9 647 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 SGK2Q9HBY8 427 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 GKN1Q9NS71 199 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 PTGFRNQ9P2B2 879 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 DLGAP4Q9Y2H0 992 aa10.71□□□□□ -0.7
CLN3-244ENST00000636147 COL2A1P02458 1487 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 GLYATL1P3A0A0U1RQE8 302 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 ASPDHA6ND91 283 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PDYNP01213 254 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 INHBBP09529 407 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 MASP1P48740 699 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 UGT2B15P54855 530 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SLC35A2P78381 396 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 LRRC26Q2I0M4 334 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PTCHD3Q3KNS1 767 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 MFSD14CQ5VZR4 134 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TTC23LQ6PF05 361 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 C2orf73Q8N5S3 287 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 DPP10Q8N608 796 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TMEM159Q96B96 161 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PGAP3Q96FM1 320 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 BOCQ9BWV1 1114 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 ANKRA2Q9H9E1 313 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 POPDC3Q9HBV1 291 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PLSCR3Q9NRY6 295 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 DNAJC11Q9NVH1 559 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 NLE1Q9NVX2 485 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 PADI3Q9ULW8 664 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TRAV19A0A0A6YYK7 116 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PRAMEF33A0A0G2JMD5 474 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 A0A1W2PQ09 198 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CLCA1A8K7I4 914 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 HAS3O00219 553 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SSNA1O43805 119 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PRAMEF10O60809 474 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 WBP4O75554 376 aaKnown RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 IFNW1P05000 195 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 RETP07949 1114 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SOX3P41225 446 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 UGT8Q16880 541 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 DUOXA1Q1HG43 343 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 HIST2H2AA3Q6FI13 130 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 RETSATQ6NUM9 610 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TAPT1Q6NXT6 567 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PEX5LQ8IYB4 626 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 RNF175Q8N4F7 328 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 OR7G1Q8NGA0 311 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms