RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 TCP11X1B4DZS4 312 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 TMEM150CB9EJG8 249 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 E7EQ34 232 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 SLC28A2O43868 658 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 KERAO60938 352 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 RBP1P09455 135 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 RGS4P49798 205 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 ITGA1P56199 1179 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 ABRQ12979 859 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 CHI3L2Q15782 390 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 TUBB8Q3ZCM7 444 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 FAM199XQ6PEV8 388 aaPredicted RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 CYHR1Q6ZMK1 362 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 ATG14Q6ZNE5 492 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 NUDCD3Q8IVD9 361 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 GPR135Q8IZ08 494 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 DSELQ8IZU8 1212 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 C19orf47Q8N9M1 422 aaKnown RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 SLC38A9Q8NBW4 561 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 OR6Y1Q8NGX8 325 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 RHEBL1Q8TAI7 183 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 LRRC8CQ8TDW0 803 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 N4BP2L2Q92802 583 aaPredicted RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 CLIP3Q96DZ5 547 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 RNF31Q96EP0 1072 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 PDLIM5Q96HC4 596 aaKnown RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 NRTNQ99748 197 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 SLC7A5P2Q9GIP4 190 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 ACTL8Q9H568 366 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 RABEP2Q9H5N1 569 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 ACTR5Q9H9F9 607 aaPredicted RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 AKIRIN1Q9H9L7 192 aaPredicted RBP12.15□□□□□ -0.46
PNKP-217ENST00000625216 SPHK1Q9NYA1 384 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 KCNMB2Q9Y691 235 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 AP1M2Q9Y6Q5 423 aa12.15□□□□□ -0.46
PNKP-217ENST00000625216 BOD1L1Q8NFC6 3051 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CDC14CA4D256 554 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ISM1B1AKI9 464 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 UBXN8O00124 270 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 EIF3FO00303 357 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 SUV39H1O43463 412 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 FKBP9O95302 570 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CBSLP0DN79 551 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ENO3P13929 434 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 MTHFD2P13995 350 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 PVRP15151 417 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 DRD4P21917 467 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ATP5F1P24539 256 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 PKLRP30613 574 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 RORAP35398 523 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CBSP35520 551 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 BST1Q10588 318 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 UGT8Q16880 541 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ATP1A1-AS1Q5TC04 95 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 SBSNQ6UWP8 590 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 FAM47EQ6ZV65 393 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 APLFQ8IW19 511 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 MYO1HQ8N1T3 1032 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 RAB42Q8N4Z0 105 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CFAP61Q8NHU2 1237 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 FLVCR1-AS1Q8TAF5 88 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 C9orf43Q8TAL5 461 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 MAGEC3Q8TD91 643 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 RAD51AP1Q96B01 352 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CHMP6Q96FZ7 201 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ABHD17AQ96GS6 310 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 FOPNLQ96NB1 174 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 C17orf62Q9BQA9 187 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 GATA5Q9BWX5 397 aaPredicted RBP12.14□□□□□ -0.47
PNKP-217ENST00000625216 RAB11FIP5Q9BXF6 653 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 NLNQ9BYT8 704 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 CHST8Q9H2A9 424 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 MANSC1Q9H8J5 431 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 FAM60AQ9NP50 221 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 SLCO1B3Q9NPD5 702 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ACSS2Q9NR19 701 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 OXSMQ9NWU1 459 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 ADAMTS6Q9UKP5 1117 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 RNF112Q9ULX5 631 aa12.14□□□□□ -0.47
PNKP-217ENST00000625216 GMNCA6NCL1 334 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 SUPT3HB4E1H0 165 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 MKRN2OSH3BPM6 223 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 KLF11O14901 512 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 ZNF749O43361 778 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 RRP9O43818 475 aaKnown RBP12.13□□□□□ -0.47
PNKP-217ENST00000625216 SUPT3HO75486 399 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 SERPINE1P05121 402 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 CD63P08962 238 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 FURINP09958 794 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 MPC1LP0DKB6 136 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 NEFHP12036 1026 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 AGXTP21549 392 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 ARRB2P32121 409 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 NFKB2Q00653 900 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 GABPB1Q06547 395 aaPredicted RBP12.13□□□□□ -0.47
PNKP-217ENST00000625216 PPP1R3AQ16821 1122 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 PRAMEF17Q5VTA0 474 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 LIPMQ5VYY2 423 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 CGB2Q6NT52 195 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 TLDC1Q6P9B6 456 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms